Showing : GO • reset
0
votes
0
replies
1.2k
views
hyperGTest, different Results using different annotation packages
Microarray Annotation GO ChipName db0 GOstats Category Microarray Annotation GO ChipName
16.6 years ago Wiebke Iffert ▴ 20
0
votes
1
reply
1.3k
views
hyperGTest, different Results using different annotation packages
Annotation GO AnnotationDbi Annotation GO AnnotationDbi
updated 16.6 years ago by ★ 7.2k • written 16.6 years ago by ▴ 20
0
votes
0
replies
1.3k
views
biomaRt proxy issues
GO biomaRt charm GO biomaRt charm
16.7 years ago Steve Pederson ▴ 60
0
votes
1
reply
1.4k
views
justGCRMA problem :(
GO Cancer gcrma matchprobes PROcess affyio GO Cancer gcrma matchprobes PROcess affyio
updated 16.7 years ago by ▴ 20 • written 16.7 years ago by 25k
0
votes
0
replies
1.3k
views
[R] Need to build package for Affy HT HG-U133+ PM arrays
Annotation GO cdf probe affy pdInfoBuilder Annotation GO cdf probe affy pdInfoBuilder
16.7 years ago James W. MacDonald 68k
0
votes
4
replies
1.6k
views
GOLOCUSID
GO GO
updated 16.7 years ago by ▴ 450 • written 16.7 years ago by ▴ 280
0
votes
0
replies
992
views
GOstats Annotation Package
Microarray Annotation GO GOstats topGO AnnotationDbi Microarray Annotation GO GOstats
16.7 years ago Jörg ▴ 40
0
votes
2
replies
1.6k
views
Axis Scales & Components After Logicle Transformation (flowViz)
GO GO
updated 16.7 years ago by ▴ 540 • written 16.7 years ago by ▴ 270
0
votes
7
replies
2.6k
views
ragene10st
Annotation GO Rattus norvegicus ChipName cdf probe affy AnnotationDbi AffyCompatible GO
updated 16.7 years ago by ▴ 630 • written 16.7 years ago by ▴ 370
0
votes
0
replies
1.2k
views
Bioconductor Digest, Vol 73, Issue 8
Microarray Annotation GO hgu133plus2 probe biomaRt flowViz exonmap Microarray Annotation
16.7 years ago ramesh aathe ▴ 10
0
votes
1
reply
1.6k
views
Error in HyperGTest with GOHyperGParams class
Annotation GO hgu133a2 hgu133plus2 Annotation GO hgu133a2 hgu133plus2
updated 16.7 years ago by ▴ 20 • written 16.7 years ago by ▴ 510
0
votes
0
replies
912
views
How to generate the CDF files for Arabidopsis Tiling Arrays
Microarray GO cdf Microarray GO cdf
16.7 years ago Wolfgang Huber ★ 13k
0
votes
4
replies
2.7k
views
Possible to set alternative colnames on read.flowSet (flowCore)
GO GO
updated 16.7 years ago by ▴ 540 • written 16.7 years ago by ▴ 270
1
vote
0
replies
1.1k
views
RmiR, request for new package
miRNA Annotation GO cdf probe PROcess Category miRNA Annotation GO cdf probe PROcess
16.7 years ago Nishant Gopalakrishnan ▴ 340
0
votes
3
replies
1.3k
views
Choosing the transcripts for dataanalysis from GeneChip
GO cdf GO cdf
updated 16.7 years ago by ▴ 250 • written 16.7 years ago by ▴ 130
0
votes
0
replies
1.1k
views
Gostats and custom list
Annotation Pathways GO Yeast convert GOstats Category Annotation Pathways GO Yeast
16.7 years ago Iain Wallace ▴ 50
0
votes
0
replies
1.4k
views
justGCRMA problem :(
GO gcrma matchprobes PROcess affyio GO gcrma matchprobes PROcess affyio
16.7 years ago Jacek Nowak ▴ 20
0
votes
1
reply
1.7k
views
GSEABase GOCollection wrong ontology
Annotation GO hgu133plus2 affy GSEABase Annotation GO hgu133plus2 affy GSEABase
updated 16.7 years ago by 25k • written 16.7 years ago by ▴ 330
0
votes
2
replies
1.6k
views
topGO enrichment using ensembl gene list
GO GO
updated 16.7 years ago by ▴ 400 • written 16.7 years ago by ▴ 10
0
votes
0
replies
683
views
ragene10st
GO cdf GO cdf
16.8 years ago Manhong Dai ▴ 200
0
votes
0
replies
1.8k
views
PhD / PostDoc positions in Innsbruck, Austria
Microarray GO Cancer Leukemia Microarray GO Cancer Leukemia
16.8 years ago Johannes Rainer ▴ 80
0
votes
3
replies
2.3k
views
cannot access annotation from ExpressionSet in Bioc-Devel
Annotation GO Biobase limma Annotation GO Biobase limma
updated 16.8 years ago by ▴ 810 • written 16.8 years ago by ▴ 830
0
votes
0
replies
2.0k
views
Mapping GO term ID to Illumina probe ID for Illumina gene expression data
GO probe GO probe
16.8 years ago Pan Du ★ 1.2k
0
votes
2
replies
1.1k
views
Mapping GO term ID to Illumina probe ID for Illumina gene expression data
GO probe GO probe
updated 16.8 years ago by 21k • written 16.8 years ago by ▴ 640
0
votes
1
reply
1.0k
views
CSHL course
GO GO
16.8 years ago John Zhang ★ 2.9k
0
votes
5
replies
1.6k
views
edgeR and sagenhaft
SAGE GO edgeR SAGE GO edgeR
16.8 years ago Naomi Altman ★ 6.0k
0
votes
3
replies
1.6k
views
"Size" in summary() of "hyperGTest()
GO Category GO Category
updated 16.8 years ago by ★ 5.5k • written 16.8 years ago by ▴ 30
0
votes
0
replies
671
views
bioconductor
GO GO
16.8 years ago Ayyarappan Bharathi ▴ 20
0
votes
0
replies
800
views
Fwd: Re: edgeR and sagenhaft
SAGE GO edgeR SAGE GO edgeR
16.8 years ago Naomi Altman ★ 6.0k
0
votes
3
replies
1.8k
views
Gostats with Yeast annotation
Microarray Annotation GO Cancer Yeast GOstats Microarray Annotation GO Cancer Yeast
16.8 years ago Yolande Tra ▴ 160
0
votes
0
replies
638
views
Re : missing value in plotDensity
GO GO
16.8 years ago Jenny Drnevich ★ 2.0k
0
votes
2
replies
1.2k
views
Problem using SQLForge for creating a custom annotation package
Annotation GO probe Annotation GO probe
updated 16.8 years ago by ★ 7.2k • written 16.8 years ago by ▴ 70
0
votes
3
replies
1.4k
views
Error in BioMart and wormbase
GO biomaRt GO biomaRt
16.8 years ago Christof Winter ▴ 80
0
votes
0
replies
1.3k
views
browseGenome width question (rtracklayer)
Epigenetics GO hgu95av2 GLAD rtracklayer Epigenetics GO hgu95av2 GLAD rtracklayer
16.8 years ago Michael Lawrence ▴ 620
0
votes
1
reply
1.5k
views
GOstats: HyperGTest for KEGG
Annotation GO Yeast hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hgug4110b hgug4112a GO
updated 16.8 years ago by ★ 7.2k • written 16.8 years ago by ▴ 180
0
votes
4
replies
1.7k
views
Limma: Question about extracting 2-channel data
GO limma convert GO limma convert
updated 16.8 years ago by 68k • written 16.8 years ago by ▴ 120
0
votes
2
replies
1.2k
views
Error in BioMart and wormbase
GO biomaRt GO biomaRt
updated 16.8 years ago by ▴ 600 • written 16.8 years ago by ▴ 30
0
votes
0
replies
983
views
Inf when using duplicateCorrelation - now with session info
GO probe GO probe
16.8 years ago Ingrid H. G. Østensen ▴ 700
0
votes
3
replies
1.9k
views
Genome position to miRNA or gene name
miRNA Alignment GO Cancer BSgenome BSgenome miRNA Alignment GO Cancer BSgenome BSgenome
updated 16.8 years ago by 25k • written 16.8 years ago by ★ 1.9k
0
votes
4
replies
2.0k
views
error with ontoCompare (goTools)
GO hgu133a graph goTools GO hgu133a graph goTools
updated 16.8 years ago by ▴ 90 • written 16.9 years ago by ▴ 160
0
votes
0
replies
857
views
Two colour arrays - looking at just cy3 or cy5
GO GO
16.9 years ago Yogi Sundaravadanam ▴ 320
0
votes
0
replies
967
views
(no subject)
Microarray Normalization GO probe vsn limma Microarray Normalization GO probe vsn limma
16.9 years ago Gordon Smyth 53k
0
votes
0
replies
1.5k
views
GOstats: hyperGTest for KEGG with org.Sc.sgd.db
Annotation GO Yeast hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hgug4110b hgug4112a GO
16.9 years ago Paul Evans ▴ 180
0
votes
3
replies
1.2k
views
Filtering before differential expression analysis of microarrays - New paper out (James W. MacDonald)
Microarray GO limma Microarray GO limma
16.9 years ago Jenny Drnevich ★ 2.0k
0
votes
0
replies
806
views
Filtering before differential expression analysis of microarrays - New paper out (James W. MacDonald)
Microarray GO limma Microarray GO limma
16.9 years ago Sherosha Raj ▴ 90
0
votes
1
reply
1.6k
views
BioC problem with result.summary in simpleaffy
GO GO
updated 16.9 years ago by 68k • written 16.9 years ago by ▴ 40
0
votes
1
reply
790
views
Problem with p-values calculated by eBayes
Microarray GO probe Microarray GO probe
16.9 years ago Chen, Zhuoxun ▴ 40
0
votes
2
replies
1.2k
views
Problem with p-values calculated by eBayes--corrected format
Microarray GO probe Microarray GO probe
updated 16.9 years ago by ★ 6.5k • written 16.9 years ago by ▴ 40
0
votes
1
reply
790
views
SemSim returns Lin similiarity greater than 1 (01-06-2009).
GO SemSim GO SemSim
updated 16.9 years ago by 16k • written 16.9 years ago by ▴ 10
0
votes
8
replies
2.0k
views
affylmGUI segfault on "pd.ragene.1.0.st.v1"
Normalization GO cdf affy affylmGUI Normalization GO cdf affy affylmGUI
updated 16.9 years ago by ★ 13k • written 16.9 years ago by ▴ 70
1,936 results • Page 24 of 39
Recent ...
Replies
Answer: How can I correctly use phyloseq with Docker? by Kevin Blighe ★ 4.0k
The Bioconductor version must be compatible with the R version. Bioconductor version 3.18 is compatible with R version 4.3. The Dockerfile …
Answer: Boolean Gate Combination for Any 2 Positive Events in flowWorkspace by Kevin Blighe ★ 4.0k
Your proposed code is correct and will achieve the desired outcome. The boolean filter expression `IFNg & TNFa | IFNg & IL2 | TNFa & IL2` i…
Answer: Guidance Requested on GCN Network Analysis and Module Enrichment in R by Kevin Blighe ★ 4.0k
The discrepancy between `final_exp1` and `final_exp2` could arise from several factors, despite matching dimensions. The `identical()` func…
Answer: ORFik: spliced 5utr regions by Kevin Blighe ★ 4.0k
Hello Luna. The findUORFs function in ORFik identifies upstream open reading frames by extracting and concatenating the sequences of exo…
Answer: Results with PON give more variants by Kevin Blighe ★ 4.0k
Your observation aligns with the expected behavior of Mutect2 in tumor-only mode, where the panel of normals (PON) integrates into the vari…
Votes
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
Awards • All
Scholar to Gordon Smyth 53k
Popular Question to shepherl 4.2k
Supporter to fabio.marroni • 0
Popular Question to Guido Hooiveld ★ 4.1k
Popular Question to James W. MacDonald 68k
Locations • All
United States, 1 hour ago
United States, 2 hours ago
United States, 4 hours ago
United States, 4 hours ago
United States, 5 hours ago
Traffic: 357 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6