Bioconductor GeneOntology

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337

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Atlanticsalmon clusterPro Salmosalar AnnotationHub GeneOntology

updated 9 weeks ago by Michael Love 41k • written 9 weeks ago by Filipe • 0

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1.6k

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rnaseq rnaseqGene geneontology

updated 17 months ago by James W. MacDonald 65k • written 17 months ago by acram • 0

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809

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microRNA gene RNASeqRData edgeR geneontology

18 months ago faiza • 0

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525

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GO GeneOntology LocusIDtogeneIDconversion

19 months ago BioinFo.X • 0

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1.6k

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Annotation GeneOntology topGO GO

updated 22 months ago by James W. MacDonald 65k • written 22 months ago by Raito92 ▴ 60

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902

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GOstats Go.db GeneOntology

3.1 years ago MOHAMMAD • 0

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922

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GO.db Annotation Clusterprofile GeneOntology

updated 3.2 years ago by Basti ▴ 780 • written 3.2 years ago by MOHAMMAD • 0

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1.4k

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topGO enrichmentanalysis geneontology

updated 3.2 years ago by Lluís Revilla Sancho ▴ 730 • written 3.2 years ago by Aini • 0

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7.1k

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clusterprofiler geneontology

updated 6.5 years ago by thokall ▴ 160 • written 6.5 years ago by giuseppe0525 • 0

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982

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geneontology R go semantic similarity

updated 7.4 years ago by Valerie Obenchain ★ 6.8k • written 7.4 years ago by manasa22.reddy • 0

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Comment: SGSeq: moving toward diffex from SGSeq analysis by Sara • 0

Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

I tried different block lengths first and considered 100000 to be ideal because of the almost similar inter-range distance. S1= bootRange…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

The segmentation and block length are key parameters. We recommend for example blocks of length ~500kb. It would help if you would post yo…

Answer: Handling multiple differential expression comparisons by Michael Love 41k

It's typical that results are presented with each group having its own FDR control. So presenting each comparison with the adjusted p-va…

Comment: Too many significant genes when integrating gtex and tcga by ATpoint ★ 4.1k

These two datasets are from completely different experiments / batches. It is utterly meaningless to compare them. I would suggest comparat…

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Print Differentially Expressed Exons From Dexseq Results

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

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