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GeneOntology
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922
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Geno Ontology Analysis using gene symbol
GO.db
Annotation
Clusterprofile
GeneOntology
updated 3.2 years ago by
Basti
▴ 780 • written 3.2 years ago by
MOHAMMAD
• 0
2
votes
1
reply
337
views
clusterProfiler, AnnotationHub, and discrepancies in GO Terms
Atlanticsalmon
clusterPro
Salmosalar
AnnotationHub
GeneOntology
updated 9 weeks ago by
Michael Love
41k • written 9 weeks ago by
Filipe
• 0
1
vote
2
replies
902
views
Getting list of genes enriched in each of Biological process terms
GOstats
Go.db
GeneOntology
3.1 years ago
MOHAMMAD
• 0
1
vote
4
replies
809
views
RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
microRNA
gene
RNASeqRData
edgeR
geneontology
18 months ago
faiza
• 0
1
vote
3
replies
1.4k
views
topGO enrichment analysis, ontology selection.
topGO
enrichmentanalysis
geneontology
updated 3.2 years ago by
Lluís Revilla Sancho
▴ 730 • written 3.2 years ago by
Aini
• 0
1
vote
3
replies
1.6k
views
Trouble importing my own Gene Ontology Annotation into topGO
Annotation
GeneOntology
topGO
GO
updated 22 months ago by
James W. MacDonald
65k • written 22 months ago by
Raito92
▴ 60
0
votes
3
replies
1.6k
views
Gene ontology enrichment analysis
rnaseq
rnaseqGene
geneontology
updated 17 months ago by
James W. MacDonald
65k • written 17 months ago by
acram
• 0
0
votes
6
replies
7.1k
views
question on GO analysis using clusterProfiler
clusterprofiler
geneontology
updated 6.5 years ago by
thokall
▴ 160 • written 6.5 years ago by
giuseppe0525
• 0
0
votes
0
replies
525
views
Gene Ontology on Streptococcus Pneumoniae genes sets
GO
GeneOntology
LocusIDtogeneIDconversion
19 months ago
BioinFo.X
• 0
0
votes
1
reply
982
views
GOSemSim bioconductor package
geneontology
R
go semantic similarity
updated 7.4 years ago by
Valerie Obenchain
★ 6.8k • written 7.4 years ago by
manasa22.reddy
• 0
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Comment: SGSeq: moving toward diffex from SGSeq analysis
by
Sara
• 0
Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I tried different block lengths first and considered 100000 to be ideal because of the almost similar inter-range distance. S1= bootRange…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
The segmentation and block length are key parameters. We recommend for example blocks of length ~500kb. It would help if you would post yo…
Answer: Handling multiple differential expression comparisons
by
Michael Love
41k
It's typical that results are presented with each group having its own FDR control. So presenting each comparison with the adjusted p-va…
Comment: Too many significant genes when integrating gtex and tcga
by
ATpoint
★ 4.1k
These two datasets are from completely different experiments / batches. It is utterly meaningless to compare them. I would suggest comparat…
Votes
Print Differentially Expressed Exons From Dexseq Results
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
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