Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
Goana
•
reset
15
votes
18
replies
3.4k
views
Is goana function for Gene Ontology enrichement analysis suitable for both edgeR and DESeq2 DEGs lists?
DESeq2
edgeR
goana
GO
updated 2.1 years ago by
Gordon Smyth
50k • written 2.1 years ago by
Raito92
▴ 60
6
votes
10
replies
5.1k
views
goana and "No annotated genes found in universe" even with Entrez gene ids
goana
edger
updated 2.3 years ago by
Gordon Smyth
50k • written 4.8 years ago by
matrs
▴ 10
5
votes
7
replies
2.2k
views
Alternative tools to perform GO enrichment on DE genes
go
de
enrichment
rnaseq
goana
updated 4.1 years ago by
Gordon Smyth
50k • written 4.1 years ago by
Raito92
▴ 60
13
votes
6
replies
6.2k
views
goana limma- extract list of DE genes and genes in the enriched GO terms?
limma
goana
updated 8.8 years ago by
Gordon Smyth
50k • written 8.8 years ago by
carl.mann
▴ 20
3
votes
6
replies
2.3k
views
Strange output from goana()
edger
goana
updated 7.2 years ago by
Gordon Smyth
50k • written 7.2 years ago by
cronanz
• 0
3
votes
4
replies
1.3k
views
Cannot retrieve DE genes from goana GO terms
limma
goana
edger
updated 5.8 years ago by
Aaron Lun
★ 28k • written 5.8 years ago by
b.nota
▴ 360
0
votes
4
replies
1.9k
views
need help with microarray GO enrichment using goana
goana
limma
updated 7.5 years ago by
Gordon Smyth
50k • written 7.5 years ago by
mat149
▴ 70
0
votes
4
replies
3.1k
views
No annotated genes found in universe error using goana and kegga
limma
goana
gene set enrichment
6.5 years ago
emy_66
• 0
0
votes
3
replies
418
views
Agilent Microarray Gene Oncology analysis gone wrong
AgilentChip
limma
goana
updated 4 months ago by
SamGG
▴ 350 • written 4 months ago by
samagbeyimodupe
• 0
4
votes
3
replies
1.3k
views
including information indicating upregulation/downregulation of genes in goana()
edger
goana
updated 7.7 years ago by
James W. MacDonald
65k • written 7.7 years ago by
jhj89
▴ 10
0
votes
3
replies
2.5k
views
Using kegga and goana for Plants
edger
goana
kegga
updated 6.2 years ago by
Gordon Smyth
50k • written 6.2 years ago by
jfreixas
• 0
0
votes
3
replies
1.2k
views
UnProducible error with goana and kegga function
limma
goana
kegga
updated 4.6 years ago by
Gordon Smyth
50k • written 4.6 years ago by
Ahdee
▴ 50
1
vote
2
replies
956
views
Results Goana after edgeR pipeline
EdgeR
Bioinformatics
Goana
2.7 years ago
Barista
• 0
3
votes
2
replies
4.6k
views
No genes found in universe : goana error
edger
goana
gene ontology
6.6 years ago • updated 6.5 years ago
fawazfebin
▴ 60
0
votes
2
replies
1.4k
views
prior.prob has opposite effects in goana and kegga?
limma
missMethyl
gometh
goana
kegga
updated 6.8 years ago by
Gordon Smyth
50k • written 7.0 years ago by
Jenny Drnevich
★ 2.0k
0
votes
0
replies
3.0k
views
Create a Gene Enrichment GO plot from goana output
goana
RNASeq
edgeR
RnaSeq
GO
2.1 years ago
Raito92
▴ 60
16 results • Page
1 of 1
Recent ...
Replies
Comment: SGSeq: moving toward diffex from SGSeq analysis
by
Sara
• 0
Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I tried different block lengths first and considered 100000 to be ideal because of the almost similar inter-range distance. S1= bootRange…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
The segmentation and block length are key parameters. We recommend for example blocks of length ~500kb. It would help if you would post yo…
Answer: Handling multiple differential expression comparisons
by
Michael Love
41k
It's typical that results are presented with each group having its own FDR control. So presenting each comparison with the adjusted p-va…
Comment: Too many significant genes when integrating gtex and tcga
by
ATpoint
★ 4.1k
These two datasets are from completely different experiments / batches. It is utterly meaningless to compare them. I would suggest comparat…
Votes
Print Differentially Expressed Exons From Dexseq Results
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Awards
• All
Popular Question
to
Sam
▴ 10
Popular Question
to
Gordon Smyth
50k
Popular Question
to
Zainab
• 0
Popular Question
to
Theo
▴ 10
Popular Question
to
gene_bioconductor
▴ 10
Locations
• All
France,
9 minutes ago
WEHI, Melbourne, Australia,
27 minutes ago
Switzerland,
51 minutes ago
United States,
52 minutes ago
India,
1 hour ago
Traffic: 433 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6