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Grange
•
reset
0
votes
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547
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Error in Medips MEDIPS.CpGenrich()
software error
Grange
RangedData
4.2 years ago
mawusse.agbessi
• 0
2
votes
0
replies
805
views
SOLVED. finding distance to nearest neighbour (non-self) within a list in GenomicRanges
GenomicRanges
GenomicFeatures
grange
distanceToNearest
R
4.5 years ago
rmash
▴ 20
0
votes
1
reply
608
views
Multi-sample Heatmap from GRange
GRange
updated 5.4 years ago by
James W. MacDonald
66k • written 5.4 years ago by
Danny
• 0
0
votes
3
replies
2.5k
views
Selecting columns form a list of grange objects
r
granges
grange
5.7 years ago • updated 5.6 years ago
g.k
• 0
1
vote
3
replies
969
views
GRange and bam files
bioconductor
Grange
6.0 years ago
Merlin
▴ 10
0
votes
1
reply
934
views
Detect Sites with Minimum Gap in GRanges Object
R
genomicranges
granges
grange
6.1 years ago
g.k
• 0
1
vote
2
replies
1.4k
views
Detecting Overlaps within Grange Object
r
grange
granges
iranges
updated 6.2 years ago by
Michael Lawrence
★ 11k • written 6.2 years ago by
g.k
• 0
3
votes
4
replies
5.3k
views
GenomicRanges: Take union of GRanges and keep metadata?
GRange
genomicranges
updated 7.7 years ago by
Martin Morgan
25k • written 7.7 years ago by
endrebak85
▴ 40
1
vote
2
replies
2.4k
views
Extract GRanges for gene data frame
GRange
updated 7.8 years ago by
Martin Morgan
25k • written 7.8 years ago by
mdeea123
▴ 10
9
votes
21
replies
11k
views
annotate GRanges with upstream or downstream nearest gene
GRange
genomicranges
genomicfeatures
updated 8.4 years ago by
Ou, Jianhong
★ 1.3k • written 8.4 years ago by
tangming2005
▴ 190
0
votes
1
reply
1.0k
views
summarizeOverlaps on partial BAM file?
GenomicFeatures
GRange
Rsamtools
updated 9.3 years ago by
Valerie Obenchain
★ 6.8k • written 9.3 years ago by
cidster12
• 0
4
votes
2
replies
1.3k
views
about INCLUSIVE INTERSECTION of GRANGES
Grange
9.5 years ago • updated 9.4 years ago
Bogdan
▴ 670
12 results • Page
1 of 1
Recent ...
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Comment: recount3 problem downloading data from source sra
by
PABLO ANTONIO
• 0
Hello Leonardo, Thanks for commenting on possible solutions. I noticed comparing your session info that I was using the previous version o…
Comment: seqlevelsStyle() not working
by
websterdelacruz2087055
• 0
Specify the new URL new_url <- "https://hgdownload2.cse.ucsc.edu/goldenPath/hg19/database/chromInfo.txt.gz" Use the new URL to download th…
Comment: SGSeq: moving toward diffex from SGSeq analysis
by
Sara
• 0
Yes, thank you. I have another error now, may you please guide me. here is the code that I used till using vep: ```r # bam_path <- "~/pat…
Comment: slingshot: error with plot3d.SlingshotDataSet
by
Happiness
• 0
Hi please i am encountering similar issue how did you fix it. Here is the code: ## Run Slingshot p3.neuron.sds <- slingshot(Embeddings(…
Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
by
mohammedtoufiq91
▴ 10
https://support.bioconductor.org/u/5106/ thank you very much.
Votes
Answer: recount3 problem downloading data from source sra
Answer: recount3 problem downloading data from source sra
Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
Comment: Ensembl plants at annotationHub?
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