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Showing :
HDF5Array
•
reset
3
votes
3
replies
641
views
Reading huge bismark coverage files using bbseq::read.bismark
HDF5Array
BiocGenerics
BiocParallel
Biobase
6 months ago
jacques.imbert
• 0
4
votes
6
replies
1.1k
views
Problem loading HDF5Array in R 4.3.2
HDF5Array
updated 8 months ago by
Akshay
• 0 • written 11 months ago by
Sarah
▴ 10
0
votes
2
replies
799
views
Error in H5Fopen
HDF5Array
updated 15 months ago by
James W. MacDonald
67k • written 15 months ago by
gabriele.favaretto
• 0
2
votes
3
replies
2.0k
views
Efficiently working with HDF5-backed SingleCellExperiments
HDF5Array
SingleCellExperiment
DelayedArray
2.2 years ago • updated 2.1 years ago
merv
▴ 140
1
vote
1
reply
1.6k
views
Extract only dataframes from AnnData objects
rhdf5
HDF5Array
anndata
SingleCellExperiment
updated 2.2 years ago by
Peter Hickey
▴ 740 • written 2.2 years ago by
merv
▴ 140
5
votes
1
reply
3.2k
views
How to save `SingleCellExperiment` with `DelayedArray` assay(s) in a portable format?
HDF5Array
SingleCellExperiment
DelayedArray
2.2 years ago
merv
▴ 140
0
votes
0
replies
1.3k
views
Combining multiple MTX (matrix market) files to HDF5 Array format
HDF5Array
SingleCellExperiment
DelayedArray
2.2 years ago
merv
▴ 140
4
votes
3
replies
1.2k
views
Problem opening hdf5 files previously created with HDF5Array functions
HDF5Array
updated 3.1 years ago by
Mike Smith
★ 6.6k • written 3.1 years ago by
eric.kern13
▴ 20
4
votes
13
replies
2.3k
views
Speeding up of DelayedArray::write_block()
HDF5Array
DelayedArray
updated 13 months ago by
Hervé Pagès
16k • written 3.1 years ago by
Koki
▴ 10
4
votes
3
replies
1.3k
views
Temporal directory setting for DelayedArray
HDF5Array
DelayedArray
3.3 years ago
Koki
▴ 10
2
votes
3
replies
1.3k
views
Generating a DelayedArray with a size greater than .Machine$integer.max
bit64
HDF5Array
DelayedArray
updated 3.4 years ago by
Hervé Pagès
16k • written 3.4 years ago by
Koki
▴ 10
3
votes
5
replies
1.5k
views
Block processing matrices of different dimensions with DelayedArray
HDF5Array
DelayedArray
updated 3.4 years ago by
Hervé Pagès
16k • written 3.4 years ago by
Pedro Baldoni
▴ 40
0
votes
1
reply
1.0k
views
How to incrementaly load the nzdata and nzindex from SparseArraySeed
TileDBArray
HDF5Array
DelayedArray
3.4 years ago
Koki
▴ 10
9
votes
8
replies
1.8k
views
Processing time of blockApply and DelayedArray
DelayedArray
HDF5Array
updated 3.4 years ago by
Hervé Pagès
16k • written 3.4 years ago by
Pedro Baldoni
▴ 40
2
votes
4
replies
1.3k
views
`aperm`, `realize`, `writeHDF5Array`, and `ReshapedHDF5Array` are block size aware?
HDF5Array
DelayedArray
3.5 years ago
Koki
▴ 10
1
vote
2
replies
1.3k
views
Error: C stack usage of HDF5Array
DelayedArray
HDF5Array
3.5 years ago
Koki
▴ 10
2
votes
6
replies
1.7k
views
"dim<-" against on-disk arrays
DelayedArray
TileDBArray
HDF5Array
updated 3.4 years ago by
Hervé Pagès
16k • written 3.5 years ago by
Koki
▴ 10
6
votes
6
replies
2.0k
views
Is it possible to create `HDF5Array` Delayed Arrays from HDF5 files hosted on S3?
TileDBArray
HDF5Array
MultiAssayExperiment
3.7 years ago
Thomas Sandmann
▴ 90
4
votes
2
replies
1.5k
views
HDF5Array Single cell experiment objects - can on-disk files change?
HDF5Array
updated 5.7 years ago by
Aaron Lun
★ 28k • written 5.7 years ago by
sarah.williams1
▴ 40
1
vote
4
replies
2.1k
views
Trouble loading 'lumi' package
lumi
illumina
hdf5array
updated 6.2 years ago by
James W. MacDonald
67k • written 6.2 years ago by
Alexander Azarian
▴ 30
12
votes
15
replies
3.9k
views
error with HDF5Array
hdf5array
biocparallel
updated 6.5 years ago by
Mike Smith
★ 6.6k • written 6.5 years ago by
cath
▴ 30
4
votes
1
reply
2.7k
views
Using HDF5Array writeHDF5Array for a large dgCMatrix
HDF5Array
dgCMatrix
updated 6.6 years ago by
Aaron Lun
★ 28k • written 6.6 years ago by
rubi
▴ 110
22 results • Page
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Comment: BiomaRt Possible Ensembl SSL connectivity problems detected.
by
Adam
• 0
I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…
Comment: Problem at champ.load
by
icecreamlover
• 0
Hello! Were you able to figure this out? I am running into the same error!
Comment: ChAMP - obtaining beta values using EPICv2 annotation
by
icecreamlover
• 0
Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected.
by
Adam
• 0
Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom
by
Adam Marstrand
• 0
Thank you!
Votes
A: Up/Down Regulated GeneList from edgeR and R
A: Up/Down Regulated GeneList from edgeR and R
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Answer: Combining RNAseq and microarray data using edgeR/limma-voom
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