Bioconductor HG38

Showing : HG38 • reset

votes

722

views

SeqSQC hg38

updated 2.1 years ago by James W. MacDonald 68k • written 2.1 years ago by isml2688 • 0

votes

1.2k

views

hg38 genicannotations

updated 4.2 years ago by James W. MacDonald 68k • written 4.2 years ago by bundo • 0

votes

replies

1.8k

views

Annotation variation HG38

updated 5.0 years ago by James W. MacDonald 68k • written 5.0 years ago by Emanuele • 0

votes

replies

1.7k

views

annotation genome hg38 TxDb.Hsapiens.UCSC.hg38.knownGene BSgenome.Hsapiens.UCSC.hg38

updated 5.8 years ago by kayla.interdonato ▴ 160 • written 5.8 years ago by jam526 • 0

votes

replies

3.2k

views

edaseq normalization hg38 biomart org.db

updated 8.0 years ago by davide risso ▴ 980 • written 8.0 years ago by mark.ebbert • 0

votes

replies

2.0k

views

featurecounts hg38

8.5 years ago raf4 ▴ 30

votes

replies

3.4k

views

salmon hg38 tximport tx2gene.csv

updated 8.7 years ago by Michael Love 43k • written 8.7 years ago by seb.boegel • 0

votes

replies

2.8k

views

rsubread ncbi GRCh38 hg38

updated 9.1 years ago by Wei Shi ★ 3.6k • written 9.1 years ago by jan.soderman • 0

vote

2.6k

views

bsgenome hg38 r version 3.1.2

updated 10.2 years ago by James W. MacDonald 68k • written 10.2 years ago by kylvalda • 0

9 results • Page 1 of 1

Recent ...

Replies

Answer: mzR-Rcpp compiler version issue by Laurent Gatto 1.6k

There are two issues here. First, a warning about mzR, that you can safely ignore. It tells you that mzR was compiled using a different …

Comment: Identifying differentially expressed genes in individual samples from a large co by jamie.gearing ▴ 60

Great. Yes, something descriptive is probably good enough, even if the p-values themselves are not so rigorous. Thanks very much Gordon!

Comment: Co-occurrence Network Analysis between Algae and Bacteria by Stefano Mangiola ▴ 40

Just a placeholder, that we are extending `sccomp` to co-occurrence analyses. Yours could be a good use-case to test first. We will be in t…

Answer: DESeq2 design for haplotype MPRA by aimesd808 • 0

I appreciate you telling me about this. Now it's crystal plain to me. Publish this: https://support.bioconductor.org/p/9162649/

Answer: Extract snp information from genomic regions with biomaRt -> "oaries_snp" by Kevin Blighe ★ 4.0k

My sincere apologies that my colleagues had ignored your question. The error occurs because the "chromosomal_region" filter is not valid…

Votes

Answer: Identifying differentially expressed genes in individual samples from a large co

Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction

Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif

Comment: Error installing Seqinfo

Awards • All