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HiTC
•
reset
0
votes
6
replies
371
views
HiTC problem exporting to my5C
HiTC
HiC-Pro
2.3 years ago
sergio.espeso-gil
• 0
1
vote
3
replies
541
views
A/B compartments computation: control settings
HiTC
updated 10 months ago by
ahmed.abbaselmahdi
• 0 • written 2.9 years ago by
Konstantin Okonechnikov
▴ 30
1
vote
5
replies
613
views
visualize Hi-C .cool file in R
Hi-C
HiTC
3.9 years ago
ta_awwad
▴ 10
0
votes
2
replies
624
views
Gene Density computation in pca.hic
HiTC
4.0 years ago
cath
▴ 30
0
votes
5
replies
821
views
HiTC importC not working
HiTC
IRanges
windows
debian
updated 4.2 years ago by
Nicolas Servant
▴ 260 • written 4.2 years ago by
René Wiegandt
• 0
3
votes
5
replies
783
views
normLGF yields non-symetric matrices
HiTC
updated 5.1 years ago by
Nicolas Servant
▴ 260 • written 5.1 years ago by
enrique.vidal
▴ 10
1
vote
10
replies
1.4k
views
FourC object from scratch
hi-c
HiTC
fourcseq
6.6 years ago • updated 6.5 years ago
Nicolas Servant
▴ 260
0
votes
0
replies
806
views
FourC object from scratch
hic-c
hitc
fourcseq
6.6 years ago
Nicolas Servant
▴ 260
4
votes
20
replies
1.4k
views
scaling loess curves
HiTC
gothic
diffhic
HiC
6.7 years ago
Bogdan
▴ 640
0
votes
0
replies
630
views
normalization method for 5C
HiTC
6.7 years ago
Bogdan
▴ 640
0
votes
0
replies
769
views
Problem importing 5C data
importing
HiTC
7.1 years ago
gugpuccio
▴ 10
0
votes
1
reply
2.1k
views
biocLite("TxDb.Hsapiens.UCSC.hg19.knownGene") fails
BSgenome
hexbin
BSgenome
IRanges
genomeIntervals
GenomicRanges
girafe
Rsamtools
HiTC
HiTC
updated 9.2 years ago by
Dan Tenenbaum
★ 8.2k • written 9.2 years ago by
Wim Kreinen
▴ 100
0
votes
4
replies
855
views
genome_intervals and GRange objects/HiTC package
Annotation
HiTC
Annotation
HiTC
updated 9.3 years ago by
Valerie Obenchain
★ 6.7k • written 9.3 years ago by
Hermann Norpois
▴ 170
0
votes
1
reply
921
views
HiTC: problem with HTClist
HiTC
HiTC
updated 9.3 years ago by
Martin Morgan
25k • written 9.3 years ago by
Hermann Norpois
▴ 170
14 results • Page
1 of 1
Recent ...
Replies
Comment: Italicise
by
Pau
• 0
They're the same: example of the vignette: "italic('VCAM1')" and result from my data: "italic('CARS1')" As I am running against time be…
Comment: Can Differential Isoform expression analysis can be performed using DESeq2 packa
by
priyanka.m
• 0
Thank you for the suggestions. I will try to compare my results and accordingly interpret the two.
Answer: [sva] Error in density.default(x, adjust = adj) : 'x' contains missing values
by
wahaha
• 0
I found the reason, because some gene expression levels are 0 in all samples. you can add these code to check the data: >exp_mean <- appl…
Answer: DESeq2 how to specify contrast to test difference of differences
by
Nicole
• 0
The comment from @mikelove about specifying numeric contrasts answered my question. This code is not standalone, but I will leave it here i…
Comment: DESeq2 how to specify contrast to test difference of differences
by
Nicole
• 0
Thank you, @mikelove - that did it! The results make sense now. From my original post, could you clarify what the `group1w.sexfemale` contr…
Votes
Answer: DESeq2 how to specify contrast to test difference of differences
Comment: DESeq2 how to specify contrast to test difference of differences
Answer: Confused about the design matrix in edgeR: How to tell R to consider one level a
Answer: biomaRt error unable to fix: need help troubleshooting
Answer: edgeR : results from goana and kegga functions show opposite sig. p-value
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