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HiTC
•
reset
0
votes
3
replies
886
views
HiTC import is throwing error
HiTC
importC
sparseMatrix
23 months ago • updated 22 months ago
shikha
• 0
0
votes
6
replies
899
views
HiTC problem exporting to my5C
HiTC
HiC-Pro
4.2 years ago
sergio.espeso-gil
• 0
1
vote
3
replies
1.3k
views
A/B compartments computation: control settings
HiTC
updated 2.8 years ago by
ahmed.abbaselmahdi
• 0 • written 4.8 years ago by
Konstantin Okonechnikov
▴ 40
1
vote
5
replies
1.4k
views
visualize Hi-C .cool file in R
Hi-C
HiTC
5.8 years ago
ta_awwad
▴ 10
0
votes
2
replies
1.1k
views
Gene Density computation in pca.hic
HiTC
5.9 years ago
cath
▴ 30
0
votes
5
replies
1.6k
views
HiTC importC not working
HiTC
IRanges
windows
debian
updated 6.1 years ago by
Nicolas Servant
▴ 260 • written 6.1 years ago by
René Wiegandt
• 0
3
votes
5
replies
1.4k
views
normLGF yields non-symetric matrices
HiTC
updated 7.1 years ago by
Nicolas Servant
▴ 260 • written 7.1 years ago by
enrique.vidal
▴ 10
1
vote
10
replies
2.1k
views
FourC object from scratch
hi-c
HiTC
fourcseq
8.5 years ago • updated 8.4 years ago
Nicolas Servant
▴ 260
0
votes
0
replies
1.2k
views
FourC object from scratch
hic-c
hitc
fourcseq
8.5 years ago
Nicolas Servant
▴ 260
4
votes
20
replies
2.4k
views
scaling loess curves
HiTC
gothic
diffhic
HiC
8.6 years ago
Bogdan
▴ 670
0
votes
0
replies
860
views
normalization method for 5C
HiTC
8.7 years ago
Bogdan
▴ 670
0
votes
0
replies
1.0k
views
Problem importing 5C data
importing
HiTC
9.0 years ago
gugpuccio
▴ 10
0
votes
1
reply
2.6k
views
biocLite("TxDb.Hsapiens.UCSC.hg19.knownGene") fails
BSgenome
hexbin
BSgenome
IRanges
genomeIntervals
GenomicRanges
girafe
Rsamtools
HiTC
HiTC
updated 11.1 years ago by
Dan Tenenbaum
★ 8.2k • written 11.1 years ago by
Wim Kreinen
▴ 100
0
votes
4
replies
1.3k
views
genome_intervals and GRange objects/HiTC package
Annotation
HiTC
Annotation
HiTC
updated 11.2 years ago by
Valerie Obenchain
★ 6.8k • written 11.2 years ago by
Hermann Norpois
▴ 170
0
votes
1
reply
1.2k
views
HiTC: problem with HTClist
HiTC
HiTC
updated 11.2 years ago by
Martin Morgan
25k • written 11.2 years ago by
Hermann Norpois
▴ 170
15 results • Page
1 of 1
Recent ...
Replies
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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