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MSIGDB
•
reset
2
votes
2
replies
801
views
fgsea stuck in an infinite loop in the middle of the run
GSEABase
fgsea
msigdb
GeneSetEnrichment
5 months ago
Assa Yeroslaviz
★ 1.5k
0
votes
0
replies
361
views
Filtering the genesets for fgseaMultiLevel
msigdb
fgsea
msig
8 months ago
Tanvi
• 0
0
votes
2
replies
682
views
How to make GSEAplot with chip set
geneset
GeneSetEnrichment
msigdb
10 months ago
Seongsu
• 0
4
votes
3
replies
816
views
Problem converting msigdb Human symbols to Zebrafish in gmt format
msigdb
gmt
GSEA
written 11 months ago by
Georg
• 0
4
votes
4
replies
2.9k
views
How should I run ssGSEA Hallmark Enrichment Analysis?
ssgsea
GSVA
biotype
proteincoding
msigdb
updated 4 months ago by
Ginny
• 0 • written 14 months ago by
snijesh
▴ 200
1
vote
1
reply
1.9k
views
Cleaning GeneSets from GSEA
msigdb
GSEABase
GSVA
updated 2.9 years ago by
Robert Castelo
★ 3.4k • written 2.9 years ago by
forlani.luca
• 0
1
vote
1
reply
2.3k
views
Tutorial:
Update gene symbols in GeneSetCollection
gseabase
msigdb
genesetcollection
Tutorial
written 6.7 years ago by
t.kuilman
▴ 170
2
votes
2
replies
4.9k
views
Clusterprofiler - MSigDB gene set analysis - Updated
clusterprofiler
GSEA
MSIGDB
updated 6.9 years ago by
Guangchuang Yu
★ 1.2k • written 6.9 years ago by
thomasjenner333
• 0
1
vote
2
replies
1.6k
views
Update to MSigDB derivates for romer()?
limma
romer
msigdb
updated 9.5 years ago by
James W. MacDonald
68k • written 9.5 years ago by
Jon Manning
▴ 40
0
votes
0
replies
1.5k
views
hyperGTest for MSigDB categories
category
gostats
msigdb
hypergeometric test
9.6 years ago
petyuk
▴ 70
10 results • Page
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Replies
Comment: For some reason I can't update BiocManager to 3.20
by
shepherl
4.1k
It seems likely this was installed as an admin account and a user account would not be able to update. Someone with admin access should run…
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
by
James W. MacDonald
68k
Any query over the internet can vary in the time to completion due to the vagaries of the connection you may have. I just tried your query …
Answer: batch effect removal for agilent microarray data
by
James W. MacDonald
68k
If all of the samples in group 155 are one type, and all the other samples in 438 are the other, then no. The biological and technical vari…
Answer: Automatically install dependencies
by
shepherl
4.1k
Since `BiocManager::install` is a wrapper around `install.packages` you should be able to use the dependencies argument. Default is the de…
Comment: For some reason I can't update BiocManager to 3.20
by
azm.ana2
• 0
Sorry i apologize for the delay. Thank you very much for the answer. I have two supervisers and the one who knows about the computer is com…
Votes
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
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