Bioconductor MSIGDB

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881

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GSEABase fgsea msigdb GeneSetEnrichment

6 months ago Assa Yeroslaviz ★ 1.5k

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406

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msigdb fgsea msig

9 months ago Tanvi • 0

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758

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geneset GeneSetEnrichment msigdb

12 months ago Seongsu • 0

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897

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msigdb gmt GSEA

written 12 months ago by Georg • 0

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3.4k

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ssgsea GSVA biotype proteincoding msigdb

updated 6 months ago by tifaGis • 0 • written 16 months ago by snijesh ▴ 200

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2.1k

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msigdb GSEABase GSVA

updated 3.0 years ago by Robert Castelo ★ 3.4k • written 3.0 years ago by forlani.luca • 0

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2.3k

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gseabase msigdb genesetcollection Tutorial

written 6.8 years ago by t.kuilman ▴ 170

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5.0k

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clusterprofiler GSEA MSIGDB

updated 7.0 years ago by Guangchuang Yu ★ 1.2k • written 7.0 years ago by thomasjenner333 • 0

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1.6k

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limma romer msigdb

updated 9.6 years ago by James W. MacDonald 68k • written 9.6 years ago by Jon Manning ▴ 40

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1.5k

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category gostats msigdb hypergeometric test

9.7 years ago petyuk ▴ 70

10 results • Page 1 of 1

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Comment: Package developing and interoperation with Bioconductor by slizchap • 0

Thank you so much for your answer. This was very useful, I will optimize my functions so they can handle SE objects.

Comment: Package developing and interoperation with Bioconductor by slizchap • 0

Thank you so much for your answer, very useful!

Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Mike Smith ★ 6.6k

Tricky to try and debug this without some example files to work with. Can you provide the output of `traceback()` called immediately after…

Answer: Mismatch between Illumina Mouse Methylation BeadChip annotation and genome brows by James W. MacDonald 68k

The annotation data that is provided for this array is simply a repackaging of data that we get from Illumina, so any apparent inconsistenc…

Answer: Package developing and interoperation with Bioconductor by James W. MacDonald 68k

Ideally you would have S4 methods that dispatch on the incoming data structure, so people could call your main function using a `data.frame…

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Comment: ComBat with repeated measures

Answer: Package developing and interoperation with Bioconductor

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?

Answer: Explannation for ROAST results

A: How DiffBind run PCA based on peak data?

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