Bioconductor MSIGDB

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1.2k

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GSEABase fgsea msigdb GeneSetEnrichment

15 months ago Assa Yeroslaviz ★ 1.5k

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557

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msigdb fgsea msig

17 months ago Tanvi • 0

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1.1k

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geneset GeneSetEnrichment msigdb

20 months ago Seongsu • 0

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1.3k

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msigdb gmt GSEA

written 20 months ago by Georg • 0

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4.8k

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ssgsea GSVA biotype proteincoding msigdb

updated 14 months ago by tifaGis • 0 • written 2.0 years ago by snijesh ▴ 200

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2.5k

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msigdb GSEABase GSVA

updated 3.7 years ago by Robert Castelo ★ 3.4k • written 3.7 years ago by forlani.luca • 0

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2.6k

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gseabase msigdb genesetcollection Tutorial

written 7.4 years ago by t.kuilman ▴ 170

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5.5k

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clusterprofiler GSEA MSIGDB

updated 7.7 years ago by Guangchuang Yu ★ 1.2k • written 7.7 years ago by thomasjenner333 • 0

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1.8k

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limma romer msigdb

updated 10.3 years ago by James W. MacDonald 68k • written 10.3 years ago by Jon Manning ▴ 40

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1.7k

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category gostats msigdb hypergeometric test

10.3 years ago petyuk ▴ 70

10 results • Page 1 of 1

Recent ...

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Comment: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k

It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …

Comment: problem reading bam files into nucleR by efoss ▴ 10

I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…

Answer: two questions about limma by Gordon Smyth 53k

Answered here: https://support.bioconductor.org/p/16318/

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

Comment: Large logFC but somewhat high FDR by JKim • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.

Votes

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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