Showing : MSIGDB • reset
2
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fgsea stuck in an infinite loop in the middle of the run
GSEABase fgsea msigdb GeneSetEnrichment
15 months ago Assa Yeroslaviz ★ 1.5k
0
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0
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566
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Filtering the genesets for fgseaMultiLevel
msigdb fgsea msig
18 months ago Tanvi • 0
0
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2
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1.1k
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How to make GSEAplot with chip set
geneset GeneSetEnrichment msigdb
20 months ago Seongsu • 0
4
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3
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1.3k
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Problem converting msigdb Human symbols to Zebrafish in gmt format
msigdb gmt GSEA
written 21 months ago by • 0
4
votes
4
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4.9k
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How should I run ssGSEA Hallmark Enrichment Analysis?
ssgsea GSVA biotype proteincoding msigdb
updated 14 months ago by • 0 • written 2.0 years ago by ▴ 200
1
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1
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2.5k
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Cleaning GeneSets from GSEA
msigdb GSEABase GSVA
updated 3.7 years ago by ★ 3.4k • written 3.7 years ago by • 0
1
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1
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2.6k
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Tutorial: Update gene symbols in GeneSetCollection
gseabase msigdb genesetcollection Tutorial
written 7.5 years ago by ▴ 170
2
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2
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5.5k
views
Clusterprofiler - MSigDB gene set analysis - Updated
clusterprofiler GSEA MSIGDB
updated 7.7 years ago by ★ 1.2k • written 7.8 years ago by • 0
1
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2
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1.8k
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Update to MSigDB derivates for romer()?
limma romer msigdb
updated 10.3 years ago by 68k • written 10.3 years ago by ▴ 40
0
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0
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1.7k
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hyperGTest for MSigDB categories
category gostats msigdb hypergeometric test
10.4 years ago petyuk ▴ 70
10 results • Page 1 of 1
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Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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