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Missing Data
•
reset
1
vote
3
replies
1.8k
views
Missing Clinical LIHC Data
Missing Data
TCGAbiolinks
Kaplan-Meier
LIHC
Xenabrowser
5.2 years ago
jam526
• 0
0
votes
4
replies
3.2k
views
how to handle missing data for SampleTable in DESeq2
deseq2
sample_table
missing data
updated 6.0 years ago by
g.wang2
• 0 • written 9.8 years ago by
anpham
▴ 60
0
votes
1
reply
1.6k
views
DESeq2 paired design with missing samples and multiple conditions
deseq2
paired samples
missing data
multiple treatments
updated 6.2 years ago by
Michael Love
43k • written 6.2 years ago by
greg.deakin
• 0
0
votes
13
replies
2.9k
views
handling missing data (NA) for methylaion analysis in Limma
limma
missing data
methylation
normalization
updated 7.2 years ago by
Aaron Lun
★ 28k • written 7.2 years ago by
mheydarpour
▴ 10
2
votes
5
replies
2.7k
views
Why does limma contrast.fit produces NA's for all contrast although missing data only in one condition?
limma
contrast
missing data
lmfit
makecontrasts
updated 7.4 years ago by
Gordon Smyth
52k • written 7.4 years ago by
wewolski
▴ 10
0
votes
0
replies
975
views
imputing data using pcaMethods with large amounts of missing data in rows
pcamethods
missing data
7.8 years ago
eli-sava
• 0
3
votes
5
replies
8.4k
views
Wgcna with missing values - error with calculation of bicor correlations in pickSoftThreshold and blockwiseModules
software error
rnaseq
wgcna
missing data
9.1 years ago • updated 8.7 years ago
dvillarlozano
▴ 10
0
votes
1
reply
1.2k
views
Web CellHTS2 data upload
cellhts2
upload
missing data
updated 9.0 years ago by
Joseph Barry
▴ 160 • written 9.0 years ago by
zmorehouse
• 0
1
vote
1
reply
1.1k
views
filter rows by missing values frequency
missing data
filter
updated 9.1 years ago by
James W. MacDonald
67k • written 9.1 years ago by
rgescudero
• 0
0
votes
0
replies
1.7k
views
Possible methodologies for missing value imputation of continuous variables in a data frame in R
missing data
missing value imputation
impute
MICE
bioconductor
9.3 years ago
svlachavas
▴ 840
0
votes
1
reply
1.6k
views
workflowInstall issues; missing Windows binary
software error
missing data
workflowinstall
9.7 years ago
anoll2
• 0
0
votes
0
replies
1.5k
views
baySeq missing data
bayseq
missing data
9.7 years ago
k.w.lau
• 0
12 results • Page
1 of 1
Recent ...
Replies
Comment: How to sort negative log2FC or FC in RNAseq for GSEA?
by
Quang NN
▴ 10
Thank you so much for taking time to provide this clarification!
Comment: How can I generate a heatmap and clustering of differentially expressed genes in
by
Renuka
• 0
Thanks Kelvin i had same doubt .Do i need to do log2 (FPKMcounts) for this
Comment: Is there a way to do DEG analysis across two batches sharing one sample only?
by
georgeyu703
• 0
Michael, Thank you very much!
Comment: Is there a way to do DEG analysis across two batches sharing one sample only?
by
Michael Love
43k
Yes, with the knowledge that, it is expected to be underpowered.
Comment: Is there a way to do DEG analysis across two batches sharing one sample only?
by
georgeyu703
• 0
Thank you, Michael. How? Could you provide more details? Can I just do it as usual, I mean to include batch in the model?
Votes
Answer: SingleCellExperiment convenience function for metadata+expression?
How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.
Answer: EdgeR Biological CVs
Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Error in download.file for TCGAutils::symbolsToRanges
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Martin Morgan
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★ 4.1k
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▴ 70
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▴ 750
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Gordon Smyth
52k
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