Bioconductor Missing Data

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Missing Data TCGAbiolinks Kaplan-Meier LIHC Xenabrowser

5.0 years ago jam526 • 0

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deseq2 sample_table missing data

updated 5.8 years ago by g.wang2 • 0 • written 9.6 years ago by anpham ▴ 60

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deseq2 paired samples missing data multiple treatments

updated 6.0 years ago by Michael Love 42k • written 6.0 years ago by greg.deakin • 0

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2.8k

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limma missing data methylation normalization

updated 7.1 years ago by Aaron Lun ★ 28k • written 7.1 years ago by mheydarpour ▴ 10

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limma contrast missing data lmfit makecontrasts

updated 7.2 years ago by Gordon Smyth 51k • written 7.2 years ago by wewolski ▴ 10

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pcamethods missing data

7.6 years ago eli-sava • 0

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software error rnaseq wgcna missing data

8.9 years ago • updated 8.5 years ago dvillarlozano ▴ 10

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cellhts2 upload missing data

updated 8.8 years ago by Joseph Barry ▴ 160 • written 8.8 years ago by zmorehouse • 0

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missing data filter

updated 8.9 years ago by James W. MacDonald 67k • written 8.9 years ago by rgescudero • 0

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missing data missing value imputation impute MICE bioconductor

9.1 years ago svlachavas ▴ 830

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software error missing data workflowinstall

9.5 years ago anoll2 • 0

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bayseq missing data

9.6 years ago k.w.lau • 0

12 results • Page 1 of 1

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Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by Robert Castelo ★ 3.4k

Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…

Answer: DESeq2 rerun returns different results by ATpoint ★ 4.5k

DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…

Answer: [How to construct a model.matrix ] by Gordon Smyth 51k

> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…

Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0

Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…

Comment: Merge Replicates vs Mixed Model by abadgerw • 0

@gabrielhoffman any insight?

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Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta

A: Some questions for remove batch effect by using mnnCorrect

A: Recommendations for combining multiple 10x runs into one SingleCellExperiment

Answer: [How to construct a model.matrix ]

Answer: Handling biological replicates in DESeq2

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