Showing : Multiomics • reset
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Job: Job as a bioinformatician in Hamburg, Germany
DimensionReduction SingleCellData multiomics MachineLearning
9 months ago Diego's • 0
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Job: Research Fellow in Prostate Cancer Proteomics (Bioinformatics/Stats/Data Analysis) - University of St Andrews
Multiomics Proteomics Cancer Statistics Bioinformatics
14 months ago Andy Lynch ▴ 120
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Job: Bioinformatics scientist (Full-time/Permanent) for the analysis of multiomics data in oncology
clinical R bioinformatics multiomics oncology
17 months ago vincent.piras • 0
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Job: Post-doc position in multi-omics of Alzheimer's disease at Columbia University in New York City
JobPosting postdoc sequencing multiomics
2.7 years ago • updated 2.6 years ago lhd • 0
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Job: Postdoc/Bioinformatician: Helsinki - Obesity Research Unit, University of Helsinki
multiomics single-cell RNA Job
4.0 years ago mahes.muniandy • 0
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Perform correlation analysis between miRNA and mRNA gene expression data on the same TCGA dataset based on the curatedTCGAData
curatedTCGAData MultiAssayExperiment multiomics TCGA
updated 4.5 years ago by 1.1k • written 4.5 years ago by ▴ 810
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Horizontal integration of multi omic data, with continuous dependent variable
multiassayexperiment multiomics
updated 5.3 years ago by 1.1k • written 5.3 years ago by ▴ 20
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Querying specific TCGA datasets through the MultiAssayExperiment R package
MultiAssayExperiment curatedCRCdata multiomics TCGA
updated 5.3 years ago by 680 • written 5.3 years ago by ▴ 810
8 results • Page 1 of 1
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Comment: Suggested package missing from Development version of Bioconductor by Richard • 0
I have just contacted the maintainer. Is it okay if I leave the package in Suggests for now and then remove it before the next Bioconductor…
Answer: shinyMethyl - saving the file by Guillaume Devailly ▴ 60
You can probably save individual plots by right-clicking on them an save individual images. Maybe printing the page as a pdf will also work…
Answer: Deseq2 calculated log2foldchange not consistent with RPM in IP-small RNA-seq by Michael Love 40k
Did you manually calculate RPMs? Try `fpm(dds)` for comparison, as this also uses DESeq2 median ratio scaling.
Comment: collapseReplicates error after tximeta by Michael Love 40k
A note: I've now changed collapseReplicates() to output a loud warning when it is run on a DESeqDataSet (SummarizedExperiment) with more th…
Comment: Suggested package missing from Development version of Bioconductor by shepherl 3.5k
Have you tried reaching out to the maintainers? If they do not fix the package it will remain unavailable and cause ERROR in your package.…
Votes
DESeq2 analysis with only two replicates
Comment: Batch correction and repeated measures
batch effect : comBat or blocking in limma ?
Batch correction and repeated measures
Comment: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts?
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