Bioconductor NanoStringDiff

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limma edgeR DESeq2 NanoStringDiff

updated 2.7 years ago by James W. MacDonald 65k • written 2.7 years ago by reberya • 0

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1.9k

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NanoStringDiff NanoString nCounter DE analysis

updated 6 months ago by georgersmith • 0 • written 4.8 years ago by lim6432 ▴ 50

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NanoStringDiff

updated 3 months ago by pjanas • 0 • written 5.0 years ago by noelleenright ▴ 10

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992

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Nan NanoStringDiff

2.9 years ago choijamts • 0

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NanoStringDiff

4.3 years ago stephen.pollo • 0

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nanostringdiff nanostring NanoStringDiff

updated 5.9 years ago by James W. MacDonald 65k • written 6.0 years ago by casey.rimland ▴ 150

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Bioconductor Transcriptomics NanoStringDiff

updated 3.6 years ago by Laurent Gatto 1.6k • written 3.6 years ago by Pedro ▴ 10

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1.4k

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nanostring NanoStringDiff design and contrast matrix differential gene expression ncounter

6.8 years ago c.kohler • 0

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874

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DESeq2 NanoStringDiff limma

11 months ago pg45863 ▴ 10

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882

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NanoStringDiff GLM Gene expression

updated 4.7 years ago by James W. MacDonald 65k • written 4.7 years ago by Guillaume Robert • 0

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669

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NanoStringDiff

3.2 years ago YM • 0

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647

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GEOquery MicroarrayData Normalization Microarray NanoStringDiff

updated 15 months ago by James W. MacDonald 65k • written 15 months ago by Aleksandra • 0

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557

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DifferentialExpression NanoStringDiff

2.4 years ago sanrie10 • 0

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519

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NanoStringDiff

updated 17 months ago by James W. MacDonald 65k • written 17 months ago by Paraskevi • 0

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866

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NanoStringDiff clusterProfiler fgsea

11 months ago pg45863 ▴ 10

15 results • Page 1 of 1

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Comment: Numerical differences in DESeq2 output depending on different design matrix cons by JKim • 0

The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…

Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80

ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …

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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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Popular Question to Vincent J. Carey, Jr. 6.7k

Popular Question to Koen Van den Berge ▴ 180