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nanostringdiff
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0
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180
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NanoStringDiff
DifferentialExpression
NanoStringDiff
8 months ago
sanrie10
• 0
5
votes
7
replies
702
views
Nanostringdiff - defining contrast values for blocking variables in glm
limma
edgeR
DESeq2
NanoStringDiff
updated 11 months ago by
James W. MacDonald
60k • written 11 months ago by
reberya
• 0
3
votes
2
replies
405
views
R NanoStringDiff: DE analysis, from 2 group comparison method how "logFC" generated?
Nan
NanoStringDiff
13 months ago
choijamts
• 0
2
votes
4
replies
961
views
Why NanoStringDiff package so slow?
NanoStringDiff
NanoString
nCounter
DE analysis
updated 14 months ago by
anastazie.d
▴ 20 • written 3.0 years ago by
lim6432
▴ 50
0
votes
0
replies
243
views
NanoStringDiff - housekeeping genes variation
NanoStringDiff
17 months ago
YM
• 0
1
vote
1
reply
405
views
NanoStringDiff Not Recognized as Numeric
Bioconductor
Transcriptomics
NanoStringDiff
updated 21 months ago by
Laurent Gatto
1.5k • written 21 months ago by
Pedro
▴ 10
1
vote
7
replies
419
views
NanoStringDiff glm.LRT not finishing after 20 hours
NanoStringDiff
2.6 years ago
stephen.pollo
• 0
0
votes
2
replies
388
views
NanoStringDiff correction for variation between patient
NanoStringDiff
GLM
Gene expression
updated 3.0 years ago by
James W. MacDonald
60k • written 3.0 years ago by
Guillaume Robert
• 0
2
votes
2
replies
731
views
NanoStringDiff counts not numeric
NanoStringDiff
updated 3.2 years ago by
James W. MacDonald
60k • written 3.2 years ago by
noelleenright
▴ 10
1
vote
6
replies
1.1k
views
How to access normalized data in the NanoStringDiff package?
nanostringdiff
nanostring
NanoStringDiff
updated 4.2 years ago by
James W. MacDonald
60k • written 4.2 years ago by
casey.rimland
▴ 140
0
votes
0
replies
854
views
design matrix and contrast for paired experiment using NanoStringDiff for nCounter data
nanostring
NanoStringDiff
design and contrast matrix
differential gene expression
ncounter
5.1 years ago
c.kohler
• 0
11 results • Page
1 of 1
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Comment: TPM normalization starting with read counts
by
ATpoint
★ 1.4k
Neither edgeR nor DESeq2 output TPM directly. TPM is easy to calculate though if counts and appropriate length info is available (https://s…
Comment: error running UniProt.ws
by
davi.vuko
• 0
I still get the same result as above, should running BiocManager::install() do the trick?
Answer: Adding custom transcript to Salmon index
by
ATpoint
★ 1.4k
Yes, you would add the sequence to the reference transcriptome that is used for the gentrome construction. Simply make a separate fasta fil…
Comment: IsoformSwitchAnalyzeR package on mouse data
by
bpshtiwan
▴ 10
Hello Ryan, Also, I am not able to find esemble file that has haplotype info in it. Kindly, have you solved the problem? Best
Comment: Design and contrast matrices for analyzing the effect of two factors of interest
by
Gordon Smyth
46k
I understand that your mock dataset has expression data for just one protein instead of 8000, but is the phenoData complete? Does your real…
Votes
A: Importance of Order in Design Formula
remove microarray batch effects using Limma
On empirical Bayes of edgeR
Answer: CQN to DESeq2
Comment: package 'BiocInstaller' is not available (for R version 3.4.4)
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