Bioconductor Nanostringdiff

Showing : nanostringdiff • reset

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1.9k

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NanoStringDiff clusterProfiler fgsea

23 months ago pg45863 ▴ 10

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1.6k

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DESeq2 NanoStringDiff limma

24 months ago pg45863 ▴ 10

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965

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GEOquery MicroarrayData Normalization Microarray NanoStringDiff

updated 2.3 years ago by James W. MacDonald 68k • written 2.3 years ago by Aleksandra • 0

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741

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NanoStringDiff

updated 2.4 years ago by James W. MacDonald 68k • written 2.4 years ago by Paraskevi • 0

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814

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DifferentialExpression NanoStringDiff

3.4 years ago sanrie10 • 0

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limma edgeR DESeq2 NanoStringDiff

updated 3.7 years ago by James W. MacDonald 68k • written 3.7 years ago by reberya • 0

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1.3k

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Nan NanoStringDiff

3.9 years ago choijamts • 0

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2.4k

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NanoStringDiff NanoString nCounter DE analysis

updated 18 months ago by georgersmith • 0 • written 5.8 years ago by lim6432 ▴ 50

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880

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NanoStringDiff

4.2 years ago YM • 0

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1.2k

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Bioconductor Transcriptomics NanoStringDiff

updated 4.6 years ago by Laurent Gatto 1.6k • written 4.6 years ago by Pedro ▴ 10

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1.4k

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NanoStringDiff

5.3 years ago stephen.pollo • 0

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1.1k

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NanoStringDiff GLM Gene expression

updated 5.7 years ago by James W. MacDonald 68k • written 5.7 years ago by Guillaume Robert • 0

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NanoStringDiff

updated 15 months ago by pjanas • 0 • written 6.0 years ago by noelleenright ▴ 10

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nanostringdiff nanostring NanoStringDiff

updated 6.9 years ago by James W. MacDonald 68k • written 6.9 years ago by casey.rimland ▴ 170

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nanostring NanoStringDiff design and contrast matrix differential gene expression ncounter

7.8 years ago c.kohler • 0

15 results • Page 1 of 1

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Comment: DiffBind - question on the use of filtered or unfiltered input data by sloperun3az • 0

Your essay was beneficial to me, and I found it to be very useful. Thank you for writing it. You give a wealth of knowledge that is not onl…

Comment: compute_fasta_digest does not match Salmon index hash by sloperun3az • 0

The people who are reading your work are not taken into consideration, even though you appear to have a solid understanding of the subject …

Comment: parameters of filterByExpr by Paul Harrison ▴ 110

It might be worth trying limma-voom (or limma-trend) instead of a GLM based method. In our experience these are less prone to this problem.…

Comment: limma::voom vs edgeR::voomLmFit - when to use? by Gordon Smyth 52k

voomLmFit() is in edgeR instead of limma because it needs to call edgeR::glmFit() internally to determine which of the zero observations al…

Comment: limma::voom vs edgeR::voomLmFit - when to use? by Geoff • 0

Just wondering--why was this function put into `edgeR` rather than `limma`? Maybe a bit technical, but it is a little confusing from an out…

Votes

Comment: Check removeBatchEffect effectiveness

Answer: Check removeBatchEffect effectiveness

A: what should I do with many zero counts from Salmon quantification

Comment: parameters of filterByExpr

GAlignments Cigar to GRanges

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Scholar to James W. MacDonald 68k