Biostar Nanostringdiff

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180

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DifferentialExpression NanoStringDiff

8 months ago sanrie10 • 0

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702

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limma edgeR DESeq2 NanoStringDiff

updated 11 months ago by James W. MacDonald 60k • written 11 months ago by reberya • 0

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405

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Nan NanoStringDiff

13 months ago choijamts • 0

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961

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NanoStringDiff NanoString nCounter DE analysis

updated 14 months ago by anastazie.d ▴ 20 • written 3.0 years ago by lim6432 ▴ 50

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243

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NanoStringDiff

17 months ago YM • 0

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405

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Bioconductor Transcriptomics NanoStringDiff

updated 21 months ago by Laurent Gatto 1.5k • written 21 months ago by Pedro ▴ 10

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419

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NanoStringDiff

2.6 years ago stephen.pollo • 0

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388

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NanoStringDiff GLM Gene expression

updated 3.0 years ago by James W. MacDonald 60k • written 3.0 years ago by Guillaume Robert • 0

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731

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NanoStringDiff

updated 3.2 years ago by James W. MacDonald 60k • written 3.2 years ago by noelleenright ▴ 10

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1.1k

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nanostringdiff nanostring NanoStringDiff

updated 4.2 years ago by James W. MacDonald 60k • written 4.2 years ago by casey.rimland ▴ 140

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854

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nanostring NanoStringDiff design and contrast matrix differential gene expression ncounter

5.1 years ago c.kohler • 0

11 results • Page 1 of 1

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Comment: TPM normalization starting with read counts by ATpoint ★ 1.4k

Neither edgeR nor DESeq2 output TPM directly. TPM is easy to calculate though if counts and appropriate length info is available (https://s…

Comment: error running UniProt.ws by davi.vuko • 0

I still get the same result as above, should running BiocManager::install() do the trick?

Answer: Adding custom transcript to Salmon index by ATpoint ★ 1.4k

Yes, you would add the sequence to the reference transcriptome that is used for the gentrome construction. Simply make a separate fasta fil…

Comment: IsoformSwitchAnalyzeR package on mouse data by bpshtiwan ▴ 10

Hello Ryan, Also, I am not able to find esemble file that has haplotype info in it. Kindly, have you solved the problem? Best

Comment: Design and contrast matrices for analyzing the effect of two factors of interest by Gordon Smyth 46k

I understand that your mock dataset has expression data for just one protein instead of 8000, but is the phenoData complete? Does your real…

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A: Importance of Order in Design Formula

remove microarray batch effects using Limma

On empirical Bayes of edgeR

Answer: CQN to DESeq2

Comment: package 'BiocInstaller' is not available (for R version 3.4.4)

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