Showing : nanostringdiff • reset
2
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Why NanoStringDiff package so slow?
NanoStringDiff NanoString nCounter DE analysis
updated 23 days ago by ▴ 20 • written 22 months ago by ▴ 30
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70
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NanoStringDiff - housekeeping genes variation
NanoStringDiff
3 months ago YM • 0
1
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1
reply
144
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NanoStringDiff Not Recognized as Numeric
Bioconductor Transcriptomics NanoStringDiff
updated 7 months ago by 1.5k • written 7 months ago by ▴ 10
1
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7
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185
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NanoStringDiff glm.LRT not finishing after 20 hours
NanoStringDiff
17 months ago stephen.pollo • 0
0
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2
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191
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NanoStringDiff correction for variation between patient
NanoStringDiff GLM Gene expression
updated 22 months ago by 57k • written 22 months ago by • 0
1
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2
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367
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NanoStringDiff counts not numeric
NanoStringDiff
updated 2.1 years ago by 57k • written 2.1 years ago by ▴ 10
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6
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How to access normalized data in the NanoStringDiff package?
nanostringdiff nanostring NanoStringDiff
updated 3.0 years ago by 57k • written 3.0 years ago by ▴ 130
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design matrix and contrast for paired experiment using NanoStringDiff for nCounter data
nanostring NanoStringDiff design and contrast matrix differential gene expression ncounter
3.9 years ago c.kohler • 0
8 results • Page 1 of 1
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Comment: Research fellow in immunology by ATpoint ▴ 640
Try starting a new R session and then load the package again. If that fails then manually install ellipsis version 0.3.2 or greater. By the…
Answer: Creating the correct model to account for paired-samples (patient-effect) help n by Gordon Smyth 43k
In the limma User's Guide, Section 9.4.1 *Paired Samples* covers paired designs. In the edgeR User's Guide, it is Section 3.4.1.
Comment: How to convert .CEL file to .VCF file? by jesus • 0
Thank you! I'd already seen it, but the problem is that I'm using Windows and I think that code is only for Linux. Thanks anyway!
Comment: DESeq2 codes by Ram ▴ 60
DESeq2 is a piece of software that can be used to find statistically significant differential expression in RNAseq datasets. See: https://b…
Comment: DESeq2 codes by Kevin Blighe 3.1k
Hi, I changed the post type to `Question` (you had posted it as `News`). You mean that you want the raw code for DESeq2? - this can be foun…
Votes
Answer: DESeq2 for allele-specific expression with contrasts between conditions
C: DESeq2 question about use of DESeqDataSetFromTximport() from RSEM data
Comment: Data input for aracne2regulon function in viper package
Comment: DESeq2: NA's in mcols(object)$betaConv
Answer: Using tximeta::summarizeToGene function; Warning message: call dbDisconnect() w
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