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nanostringdiff
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1.2k
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fgsea/clusterProfiler Packages for nCounter data enrichment analysis
NanoStringDiff
clusterProfiler
fgsea
15 months ago
pg45863
▴ 10
0
votes
2
replies
1.1k
views
Nanostring data differential expression analysis: limma or DESeq2?
DESeq2
NanoStringDiff
limma
15 months ago
pg45863
▴ 10
0
votes
1
reply
779
views
Micro Array GEO data analysis
GEOquery
MicroarrayData
Normalization
Microarray
NanoStringDiff
updated 19 months ago by
James W. MacDonald
67k • written 19 months ago by
Aleksandra
• 0
0
votes
2
replies
618
views
NanoStringDiff contrast vectors
NanoStringDiff
updated 21 months ago by
James W. MacDonald
67k • written 21 months ago by
Paraskevi
• 0
0
votes
0
replies
666
views
NanoStringDiff
DifferentialExpression
NanoStringDiff
2.7 years ago
sanrie10
• 0
5
votes
7
replies
1.7k
views
Nanostringdiff - defining contrast values for blocking variables in glm
limma
edgeR
DESeq2
NanoStringDiff
updated 3.0 years ago by
James W. MacDonald
67k • written 3.0 years ago by
reberya
• 0
3
votes
2
replies
1.1k
views
R NanoStringDiff: DE analysis, from 2 group comparison method how "logFC" generated?
Nan
NanoStringDiff
3.2 years ago
choijamts
• 0
3
votes
6
replies
2.1k
views
Why NanoStringDiff package so slow?
NanoStringDiff
NanoString
nCounter
DE analysis
updated 10 months ago by
georgersmith
• 0 • written 5.1 years ago by
lim6432
▴ 50
0
votes
0
replies
757
views
NanoStringDiff - housekeeping genes variation
NanoStringDiff
3.5 years ago
YM
• 0
1
vote
1
reply
1.0k
views
NanoStringDiff Not Recognized as Numeric
Bioconductor
Transcriptomics
NanoStringDiff
updated 3.9 years ago by
Laurent Gatto
1.6k • written 3.9 years ago by
Pedro
▴ 10
1
vote
7
replies
1.2k
views
NanoStringDiff glm.LRT not finishing after 20 hours
NanoStringDiff
4.6 years ago
stephen.pollo
• 0
0
votes
2
replies
978
views
NanoStringDiff correction for variation between patient
NanoStringDiff
GLM
Gene expression
updated 5.1 years ago by
James W. MacDonald
67k • written 5.1 years ago by
Guillaume Robert
• 0
3
votes
3
replies
1.6k
views
NanoStringDiff counts not numeric
NanoStringDiff
updated 7 months ago by
pjanas
• 0 • written 5.3 years ago by
noelleenright
▴ 10
1
vote
6
replies
2.2k
views
How to access normalized data in the NanoStringDiff package?
nanostringdiff
nanostring
NanoStringDiff
updated 6.3 years ago by
James W. MacDonald
67k • written 6.3 years ago by
casey.rimland
▴ 170
0
votes
0
replies
1.5k
views
design matrix and contrast for paired experiment using NanoStringDiff for nCounter data
nanostring
NanoStringDiff
design and contrast matrix
differential gene expression
ncounter
7.1 years ago
c.kohler
• 0
15 results • Page
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Comment: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic
by
Michael Love
42k
I request the post here, so not a problem.
Comment: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic
by
micolak0115
• 0
Thanks for the advice Michael. I will try this with my future test datasets.
Comment: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic
by
micolak0115
• 0
Hi James, I will try to leave only relevant questions on bioconductor forum hereinafter. Thanks for the note. Cheers, Alan
Comment: SingleR Label.Ont
by
Stepah
• 0
[Aussie Play][1] cares about its Australian players by offering a safe and secure gaming experience where there is never a dull moment. The…
Comment: ensemblVEP deprecation and how to reproduce
by
Vincent J. Carey, Jr.
6.7k
What aspect of ensemblVEP are you looking for? The vignette https://bioconductor.org/packages/release/bioc/vignettes/VariantAnnotation/in…
Votes
DEXseq: How to do differential exon usage of genes with overlapping exons
A: Moderated F-test followed by moderated t-test in limma
Answer: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic
Answer: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic
Answer: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic
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