Bioconductor Outlier

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443

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Outlier

updated 13 months ago by ATpoint ★ 4.1k • written 14 months ago by sanchita.bhattacharya • 0

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1.2k

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DESeq2 RNAseq outlier

updated 15 months ago by ATpoint ★ 4.1k • written 15 months ago by James • 0

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1.9k

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RNAseq DESeq2 outlier counts DE analysis

updated 4.0 years ago by Kevin Blighe ★ 3.9k • written 4.0 years ago by DcL-A • 0

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744

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deseq2 outlier normalization removal

updated 4.1 years ago by Michael Love 41k • written 4.1 years ago by knholm • 0

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6.5k

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deseq2 rnaseq PCA hierarchical clustering outlier

7.4 years ago wd ▴ 30

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1.5k

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rnaseq outlier statistics batch effect

updated 7.9 years ago by Gordon Smyth 50k • written 7.9 years ago by grastalt27 • 0

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1.3k

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arrayQualityMetrics Microarray Outlier

updated 8.4 years ago by Wolfgang Huber ★ 13k • written 8.5 years ago by horcsct ▴ 10

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4.6k

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DESeq2 outlier RNASeq

updated 9.4 years ago by Michael Love 41k • written 9.4 years ago by kenneth.daily • 0

8 results • Page 1 of 1

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Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k

You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…

Comment: Timecourse RNASeq analysis by Aurora • 0

I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…

Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130

But.. How to run a temporal assay?

Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0

Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …

Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k

Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…

Votes

A: Print Differentially Expressed Exons From Dexseq Results

stuck on unimplemented type 'list' in 'EncodeElement'

Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

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