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PWMEnrich
•
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0
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0
replies
762
views
How to interpret difference statistic from the output of the motifDiffEnrichment() function in the PWMEnrich package?
PWMEnrich
6.0 years ago
intregen
• 0
0
votes
0
replies
890
views
makeBackground error message "Sequence only contain N's"
pwmenrich
6.7 years ago
gdeniz
• 0
0
votes
1
reply
974
views
subsetting PWMLognBackground object in the PWMEnrich package
PWMEnrich
6.8 years ago
amanda.joy.price
▴ 10
0
votes
0
replies
811
views
PWMEnruch: Error in getPromoters(organism)
r
pwmenrich
6.9 years ago
prp291
• 0
0
votes
1
reply
2.1k
views
Convert HOMER motif matrix to pfm?
homer
pwmenrich
updated 8.3 years ago by
Ou, Jianhong
★ 1.3k • written 8.3 years ago by
sarah.blackstone7734
• 0
0
votes
0
replies
1.1k
views
question about motif enrichment analysis using PWMenrich
PWMenrich
8.4 years ago
sekawaiwai2006
▴ 20
2
votes
3
replies
2.0k
views
visualing pwm motif on a DNAstring
pwmenrich
dnastringset
updated 8.8 years ago by
Robert Stojnic
▴ 50 • written 8.8 years ago by
sekawaiwai2006
▴ 20
0
votes
0
replies
1.5k
views
Import motifs in .meme format in MotifDB
motfdb
pwmenrich
meme
8.8 years ago
enricoferrero
▴ 660
0
votes
3
replies
1.6k
views
motif scanning using position frequncy matrix of motif in a given set of DNAstringset sequnces?.
motifdb
matchpwm
motif
pwmenrich
pwm
9.1 years ago
vinod.acear
▴ 50
0
votes
1
reply
2.4k
views
non-numeric argument to binary operator error with makeBackground() in PWMEnrich
pwmenrich
MotifDB
updated 9.1 years ago by
Robert Stojnic
▴ 50 • written 9.2 years ago by
elliott77
• 0
2
votes
1
reply
1.2k
views
[PWMEnrich] Enrichment p-values on human sequences
pwmenrich
log
updated 9.4 years ago by
Robert Stojnic
▴ 50 • written 9.4 years ago by
enricoferrero
▴ 660
1
vote
3
replies
1.6k
views
getBackgroundFrequencies for Arabidopsis
pwmenrich
bsgenome
9.4 years ago
oliwindram
▴ 10
0
votes
5
replies
2.8k
views
Motif enrichment analysis: Error in transfac format and background frequencies from BSGenome
BSgenome
convert
BSgenome
PWMEnrich
MotifDb
updated 10.3 years ago by
Robert Stojnic
▴ 80 • written 10.3 years ago by
deepti anand
▴ 50
0
votes
0
replies
896
views
PWMEnrich::sequenceReport() and 'res' global variable
PWMEnrich
PWMEnrich
10.5 years ago
enricoferrero
▴ 660
0
votes
8
replies
1.8k
views
plotpfm has been removed in PWMEnrich?
PWMEnrich
PWMEnrich
updated 11.1 years ago by
Robert Stojnic
▴ 80 • written 11.1 years ago by
Fabrice Tourre
▴ 970
0
votes
1
reply
1.4k
views
PWMEnrich binding site position
PWMEnrich
PWMEnrich
updated 11.3 years ago by
Robert Stojnic
▴ 50 • written 11.3 years ago by
Guest User
★ 13k
16 results • Page
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Answer: How do I fix an odd voom plot in a combined dataset?
by
Gordon Smyth
52k
voom is a DE analysis method rather than a normalization method. voom expects the design matrix to be the same complete design matrix that …
Comment: enrichGOgradient color change
by
lewis.roper
• 0
I know you submitted this months ago but you're an absolute lifesaver mate, thank you
Comment: Warning message when running limma with covariates
by
Chris
▴ 20
Hi @gordonsmyth. Happy New Year! Wishing you all the best in 2025. Thank you so much for your kind support!
Comment: minfi latest update for EPIC V2 chip
by
macdonaldfrench7286566
• 0
Yes, the most updated analysis for the EPIC V2 chip using the minfi package still involves using the annotations provided by jokergoo. *Th…
Answer: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
by
Gordon Smyth
52k
To compute CPM values from edgeR: ``` y <- DGEList(counts = counts, samples = samples, genes = genes, group = samples$Disease_status) y <- …
Votes
Answer: enrichGOgradient color change
How do I fix an odd voom plot in a combined dataset?
Answer: Warning message when running limma with covariates
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
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