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PWMenrich
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882
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How to interpret difference statistic from the output of the motifDiffEnrichment() function in the PWMEnrich package?
PWMEnrich
6.8 years ago
intregen
• 0
0
votes
0
replies
1.0k
views
makeBackground error message "Sequence only contain N's"
pwmenrich
7.5 years ago
gdeniz
• 0
0
votes
1
reply
1.1k
views
subsetting PWMLognBackground object in the PWMEnrich package
PWMEnrich
7.6 years ago
amanda.joy.price
▴ 10
0
votes
0
replies
958
views
PWMEnruch: Error in getPromoters(organism)
r
pwmenrich
7.8 years ago
prp291
• 0
0
votes
1
reply
2.4k
views
Convert HOMER motif matrix to pfm?
homer
pwmenrich
updated 9.2 years ago by
Ou, Jianhong
★ 1.3k • written 9.2 years ago by
sarah.blackstone7734
• 0
0
votes
0
replies
1.3k
views
question about motif enrichment analysis using PWMenrich
PWMenrich
9.2 years ago
sekawaiwai2006
▴ 20
2
votes
3
replies
2.3k
views
visualing pwm motif on a DNAstring
pwmenrich
dnastringset
updated 9.6 years ago by
Robert Stojnic
▴ 50 • written 9.6 years ago by
sekawaiwai2006
▴ 20
0
votes
0
replies
1.6k
views
Import motifs in .meme format in MotifDB
motfdb
pwmenrich
meme
9.6 years ago
enricoferrero
▴ 680
0
votes
3
replies
1.9k
views
motif scanning using position frequncy matrix of motif in a given set of DNAstringset sequnces?.
motifdb
matchpwm
motif
pwmenrich
pwm
9.9 years ago
vinod.acear
▴ 50
0
votes
1
reply
2.6k
views
non-numeric argument to binary operator error with makeBackground() in PWMEnrich
pwmenrich
MotifDB
updated 10.0 years ago by
Robert Stojnic
▴ 50 • written 10.0 years ago by
elliott77
• 0
2
votes
1
reply
1.4k
views
[PWMEnrich] Enrichment p-values on human sequences
pwmenrich
log
updated 10.2 years ago by
Robert Stojnic
▴ 50 • written 10.2 years ago by
enricoferrero
▴ 680
1
vote
3
replies
1.9k
views
getBackgroundFrequencies for Arabidopsis
pwmenrich
bsgenome
10.2 years ago
oliwindram
▴ 10
0
votes
5
replies
3.1k
views
Motif enrichment analysis: Error in transfac format and background frequencies from BSGenome
BSgenome
convert
BSgenome
PWMEnrich
MotifDb
updated 11.1 years ago by
Robert Stojnic
▴ 80 • written 11.1 years ago by
deepti anand
▴ 50
0
votes
0
replies
994
views
PWMEnrich::sequenceReport() and 'res' global variable
PWMEnrich
PWMEnrich
11.3 years ago
enricoferrero
▴ 680
0
votes
8
replies
2.1k
views
plotpfm has been removed in PWMEnrich?
PWMEnrich
PWMEnrich
updated 11.9 years ago by
Robert Stojnic
▴ 80 • written 11.9 years ago by
Fabrice Tourre
▴ 970
0
votes
1
reply
1.5k
views
PWMEnrich binding site position
PWMEnrich
PWMEnrich
updated 12.1 years ago by
Robert Stojnic
▴ 50 • written 12.1 years ago by
Guest User
★ 13k
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by
ATpoint
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The package has no such inbuilt function but you are free to use the vst (or any normalized) counts to train a regression model or classifi…
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James W. MacDonald
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Aaron already answered your question. If you have an HDF5 file, it will be read in as a `TENxMatrix` object, which isn't actually read in -…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
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• 0
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thank you so much for answering Dr. Love!
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