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PWMenrich
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870
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How to interpret difference statistic from the output of the motifDiffEnrichment() function in the PWMEnrich package?
PWMEnrich
6.7 years ago
intregen
• 0
0
votes
0
replies
1.0k
views
makeBackground error message "Sequence only contain N's"
pwmenrich
7.4 years ago
gdeniz
• 0
0
votes
1
reply
1.1k
views
subsetting PWMLognBackground object in the PWMEnrich package
PWMEnrich
7.6 years ago
amanda.joy.price
▴ 10
0
votes
0
replies
949
views
PWMEnruch: Error in getPromoters(organism)
r
pwmenrich
7.7 years ago
prp291
• 0
0
votes
1
reply
2.4k
views
Convert HOMER motif matrix to pfm?
homer
pwmenrich
updated 9.1 years ago by
Ou, Jianhong
★ 1.3k • written 9.1 years ago by
sarah.blackstone7734
• 0
0
votes
0
replies
1.3k
views
question about motif enrichment analysis using PWMenrich
PWMenrich
9.2 years ago
sekawaiwai2006
▴ 20
2
votes
3
replies
2.3k
views
visualing pwm motif on a DNAstring
pwmenrich
dnastringset
updated 9.5 years ago by
Robert Stojnic
▴ 50 • written 9.5 years ago by
sekawaiwai2006
▴ 20
0
votes
0
replies
1.6k
views
Import motifs in .meme format in MotifDB
motfdb
pwmenrich
meme
9.6 years ago
enricoferrero
▴ 680
0
votes
3
replies
1.9k
views
motif scanning using position frequncy matrix of motif in a given set of DNAstringset sequnces?.
motifdb
matchpwm
motif
pwmenrich
pwm
9.9 years ago
vinod.acear
▴ 50
0
votes
1
reply
2.6k
views
non-numeric argument to binary operator error with makeBackground() in PWMEnrich
pwmenrich
MotifDB
updated 9.9 years ago by
Robert Stojnic
▴ 50 • written 9.9 years ago by
elliott77
• 0
2
votes
1
reply
1.4k
views
[PWMEnrich] Enrichment p-values on human sequences
pwmenrich
log
updated 10.1 years ago by
Robert Stojnic
▴ 50 • written 10.1 years ago by
enricoferrero
▴ 680
1
vote
3
replies
1.9k
views
getBackgroundFrequencies for Arabidopsis
pwmenrich
bsgenome
10.1 years ago
oliwindram
▴ 10
0
votes
5
replies
3.0k
views
Motif enrichment analysis: Error in transfac format and background frequencies from BSGenome
BSgenome
convert
BSgenome
PWMEnrich
MotifDb
updated 11.1 years ago by
Robert Stojnic
▴ 80 • written 11.1 years ago by
deepti anand
▴ 50
0
votes
0
replies
979
views
PWMEnrich::sequenceReport() and 'res' global variable
PWMEnrich
PWMEnrich
11.2 years ago
enricoferrero
▴ 680
0
votes
8
replies
2.1k
views
plotpfm has been removed in PWMEnrich?
PWMEnrich
PWMEnrich
updated 11.8 years ago by
Robert Stojnic
▴ 80 • written 11.8 years ago by
Fabrice Tourre
▴ 970
0
votes
1
reply
1.5k
views
PWMEnrich binding site position
PWMEnrich
PWMEnrich
updated 12.1 years ago by
Robert Stojnic
▴ 50 • written 12.1 years ago by
Guest User
★ 13k
16 results • Page
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Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
by
Robert
• 0
La seguridad de descargar esta aplicación depende en gran medida de dónde y cómo la obtengas. Si la descargas de una fuente confiable y ver…
Comment: Error Loading Experiment from SimBenchData Package
by
ATpoint
★ 4.9k
Is the Seurat package installed? The error somewhat suggests that it could be related, and at https://www.bioconductor.org/packages/release…
Answer: Help with defining groups
by
Gordon Smyth
53k
Defining sample groups is separate to reading in the DIA-NN data, because the sample conditions and covariates are not necessarily coded in…
Comment: Sharing a collection of datasets in ExperimentHub
by
Peter Hickey
▴ 760
The [**scRNAseq**](https://bioconductor.org/packages/scRNAseq/) package ([source on GitHub](https://github.com/LTLA/scRNAseq)) might serve …
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
by
ReinholdGaylord99
• 0
Thank you so much! https://www.nature.com/articles/s41467-021-25960-2/ [geometry dash lite](https://geometrydashlite.online)
Votes
Answer: ordinary t from limma [was: How would I normally compare swirl?]
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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hauken_heyken
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Aaron Lun
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