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PWMenrich
•
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0
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replies
660
views
How to interpret difference statistic from the output of the motifDiffEnrichment() function in the PWMEnrich package?
PWMEnrich
5.4 years ago
intregen
• 0
0
votes
0
replies
757
views
makeBackground error message "Sequence only contain N's"
pwmenrich
6.1 years ago
gdeniz
• 0
0
votes
1
reply
823
views
subsetting PWMLognBackground object in the PWMEnrich package
PWMEnrich
6.3 years ago
amanda.joy.price
• 0
0
votes
0
replies
703
views
PWMEnruch: Error in getPromoters(organism)
r
pwmenrich
6.4 years ago
prp291
• 0
0
votes
1
reply
1.9k
views
Convert HOMER motif matrix to pfm?
homer
pwmenrich
updated 7.8 years ago by
Ou, Jianhong
★ 1.3k • written 7.8 years ago by
sarah.blackstone7734
• 0
0
votes
0
replies
1.0k
views
question about motif enrichment analysis using PWMenrich
PWMenrich
7.9 years ago
sekawaiwai2006
▴ 20
2
votes
3
replies
1.8k
views
visualing pwm motif on a DNAstring
pwmenrich
dnastringset
updated 8.2 years ago by
Robert Stojnic
▴ 50 • written 8.2 years ago by
sekawaiwai2006
▴ 20
0
votes
0
replies
1.3k
views
Import motifs in .meme format in MotifDB
motfdb
pwmenrich
meme
8.3 years ago
enricoferrero
▴ 660
0
votes
3
replies
1.5k
views
motif scanning using position frequncy matrix of motif in a given set of DNAstringset sequnces?.
motifdb
matchpwm
motif
pwmenrich
pwm
8.6 years ago
vinod.acear
▴ 50
0
votes
1
reply
2.2k
views
non-numeric argument to binary operator error with makeBackground() in PWMEnrich
pwmenrich
MotifDB
updated 8.6 years ago by
Robert Stojnic
▴ 50 • written 8.6 years ago by
elliott77
• 0
2
votes
1
reply
1.1k
views
[PWMEnrich] Enrichment p-values on human sequences
pwmenrich
log
updated 8.8 years ago by
Robert Stojnic
▴ 50 • written 8.8 years ago by
enricoferrero
▴ 660
1
vote
3
replies
1.5k
views
getBackgroundFrequencies for Arabidopsis
pwmenrich
bsgenome
8.8 years ago
oliwindram
▴ 10
0
votes
5
replies
2.5k
views
Motif enrichment analysis: Error in transfac format and background frequencies from BSGenome
BSgenome
convert
BSgenome
PWMEnrich
MotifDb
updated 9.8 years ago by
Robert Stojnic
▴ 80 • written 9.8 years ago by
deepti anand
▴ 50
0
votes
0
replies
813
views
PWMEnrich::sequenceReport() and 'res' global variable
PWMEnrich
PWMEnrich
10.0 years ago
enricoferrero
▴ 660
0
votes
8
replies
1.6k
views
plotpfm has been removed in PWMEnrich?
PWMEnrich
PWMEnrich
updated 10.5 years ago by
Robert Stojnic
▴ 80 • written 10.5 years ago by
Fabrice Tourre
▴ 970
0
votes
1
reply
1.2k
views
PWMEnrich binding site position
PWMEnrich
PWMEnrich
updated 10.8 years ago by
Robert Stojnic
▴ 50 • written 10.8 years ago by
Guest User
★ 13k
16 results • Page
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Answer: biomaRt has encountered an unknown server error while using getLDS
by
miriam.lloriansopena
• 0
This has worked very well for me. Thank you for your help!!
Answer: biomaRt has encountered an unknown server error while using getLDS
by
Mike Smith
★ 6.5k
There's a lot to unpack here! First, unfortunatley the getLDS funciontallity started failing with the release of BioMart 106. I've aske…
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
adripel
• 0
Well, I was looking at the result table (enrich18k@result, or yy@result in your example), and it gives every pathway even the non-significa…
Comment: Trouble reading samplesheet in with diffbind to create dba
by
Mallory
• 0
Thank you for your reply! There mustve been something wierd going on with my peak formats as you pointed out. I recalled all the peaks and …
Answer: Trouble reading samplesheet in with diffbind to create dba
by
Anthony
• 0
I was struggling with this today too. For me it happened because my peak files were not in the correct format. The "10 elements" refers to …
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Answer: biomaRt has encountered an unknown server error while using getLDS
A: limma: comparison of repeat measurements - blocking or within-subject correlatio
A: dream vignette says limma-voom repeated measures two-group comparison needs two
Answer: Get the latest gene name from Entrez ID
Get the latest gene name from Entrez ID
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