Bioconductor RNA Seq

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4.0k

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deseq2 mahattan plot RNA Seq

updated 5.0 years ago by bernatgel ▴ 150 • written 6.0 years ago by adeler001 • 0

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4.8k

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batch effect limma rna seq DE

updated 5.5 years ago by Steve Lianoglou ★ 13k • written 5.5 years ago by svlachavas ▴ 840

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1.4k

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RNA seq cpm

updated 5.5 years ago by Kevin Blighe ★ 4.0k • written 5.5 years ago by isabel.pieterse • 0

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1.4k

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sgseq alternative splicing rna seq

updated 14 months ago by Sara • 0 • written 5.9 years ago by 116100016 • 0

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1.3k

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edger RNA Seq

updated 5.9 years ago by James W. MacDonald 68k • written 5.9 years ago by abf ▴ 30

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796

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rna seq

5.9 years ago adeler001 • 0

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1.3k

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rna seq SGSeq Alternative splicing

updated 6.0 years ago by Leonard Goldstein ▴ 260 • written 6.0 years ago by 116100016 • 0

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801

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deseq2 likelihood ratio rna seq wald test

updated 6.1 years ago by Michael Love 43k • written 6.1 years ago by adeler001 • 0

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1.4k

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volcano plot rna seq

updated 6.1 years ago by Michael Love 43k • written 6.1 years ago by adeler001 • 0

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1.8k

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limma voom RNA Seq Time-course experiments

updated 6.3 years ago by Aaron Lun ★ 29k • written 6.3 years ago by mahes.muniandy • 0

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1.7k

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RNA seq wgcna

updated 6.4 years ago by Peter Langfelder ★ 3.0k • written 6.4 years ago by agustin.gonvi ▴ 20

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2.7k

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rna seq trimmomatic trimming adapter trimming paired analysis

6.4 years ago Mozart ▴ 30

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2.1k

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heatmap.2 hierarchical clustering microarray RNA seq DEG

7.7 years ago lawarde.ankita1 ▴ 30

13 results • Page 1 of 1

Recent ...

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Comment: Help with defining groups by Phinney, Brett ▴ 10

I got it working , thank you!!!

Comment: Check removeBatchEffect effectiveness by massimo • 0

I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…

Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0

Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k

Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…

Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k

Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…

Votes

Comment: Check removeBatchEffect effectiveness

Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)

Answer: Error Loading Experiment from SimBenchData Package

Comment: incomplete imputation of missing values with LEA impute() function

Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce

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