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RNA Seq
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0
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9
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4.0k
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How to create manhattan plot with DESeq2
deseq2
mahattan plot
RNA Seq
updated 5.1 years ago by
bernatgel
▴ 150 • written 6.0 years ago by
adeler001
• 0
2
votes
5
replies
4.9k
views
Possible batch effect correction with RNA-Seq data when the batches do not contain both biological conditions for DE analysis
batch effect
limma
rna seq
DE
updated 5.5 years ago by
Steve Lianoglou
★ 13k • written 5.5 years ago by
svlachavas
▴ 840
0
votes
3
replies
1.5k
views
Normalization of RNA seq data
RNA seq
cpm
updated 5.6 years ago by
Kevin Blighe
★ 4.0k • written 5.6 years ago by
isabel.pieterse
• 0
4
votes
4
replies
1.5k
views
Custom gene annotations for SGSeq
sgseq
alternative splicing
rna seq
updated 15 months ago by
Sara
• 0 • written 5.9 years ago by
116100016
• 0
1
vote
4
replies
1.3k
views
Difference between Fold Changes from EdgeR glmLRTest and directly calculated fold changes.
edger
RNA Seq
updated 5.9 years ago by
James W. MacDonald
68k • written 5.9 years ago by
abf
▴ 30
0
votes
0
replies
813
views
searching for specific RNA sequences
rna seq
6.0 years ago
adeler001
• 0
0
votes
2
replies
1.3k
views
using only uniquely-mapping reads for alternative splicing using SGSeq
rna seq
SGSeq
Alternative splicing
updated 6.1 years ago by
Leonard Goldstein
▴ 260 • written 6.1 years ago by
116100016
• 0
0
votes
1
reply
817
views
51 views DESeq2 RNAseq differential expression analysis
deseq2
likelihood ratio
rna seq
wald test
updated 6.1 years ago by
Michael Love
43k • written 6.1 years ago by
adeler001
• 0
0
votes
2
replies
1.4k
views
Need help cprrecting overlappinge genes on valcano plot
volcano plot
rna seq
updated 6.2 years ago by
Michael Love
43k • written 6.2 years ago by
adeler001
• 0
1
vote
5
replies
1.9k
views
Time course experiment using limma with voom
limma
voom
RNA Seq
Time-course experiments
updated 6.4 years ago by
Aaron Lun
★ 29k • written 6.4 years ago by
mahes.muniandy
• 0
5
votes
3
replies
1.7k
views
Steep dendrograms and few modules. WGCNA on RNA seq data
RNA seq
wgcna
updated 6.4 years ago by
Peter Langfelder
★ 3.0k • written 6.4 years ago by
agustin.gonvi
▴ 20
1
vote
2
replies
2.7k
views
adapter trimming paired vs unpaired reads
rna seq
trimmomatic
trimming
adapter trimming
paired analysis
6.5 years ago
Mozart
▴ 30
0
votes
0
replies
2.2k
views
Sub clustering from hierarchical cluster used to make heat map of gene expression data
heatmap.2
hierarchical clustering
microarray
RNA seq
DEG
7.7 years ago
lawarde.ankita1
▴ 30
13 results • Page
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Comment: "Watched Tags" are being erased rather than updated
by
dipakosikotes
• 0
Possibly a combination: some change in the forum software that affects some accounts/configurations but not all [unblocked games][1] […
Answer: EuroBioC2023 abstract submission is open!
by
Hao
• 0
It's obvious that the blogger hought on details. It is not only easy to read but also makes the content more rich and interesting.[1v1 …
Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts
by
Michael Love
43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
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Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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