Bioconductor RNA seq

Showing : RNA seq • reset

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3.4k

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deseq2 mahattan plot RNA Seq

updated 4.3 years ago by bernatgel ▴ 150 • written 5.3 years ago by adeler001 • 0

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4.0k

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batch effect limma rna seq DE

updated 4.8 years ago by Steve Lianoglou ★ 13k • written 4.8 years ago by svlachavas ▴ 840

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1.0k

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RNA seq cpm

updated 4.8 years ago by Kevin Blighe ★ 4.0k • written 4.8 years ago by isabel.pieterse • 0

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1.2k

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sgseq alternative splicing rna seq

updated 6 months ago by Sara • 0 • written 5.2 years ago by 116100016 • 0

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1.1k

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edger RNA Seq

updated 5.2 years ago by James W. MacDonald 67k • written 5.2 years ago by abf ▴ 30

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669

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rna seq

5.2 years ago adeler001 • 0

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1.0k

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rna seq SGSeq Alternative splicing

updated 5.3 years ago by Leonard Goldstein ▴ 260 • written 5.3 years ago by 116100016 • 0

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688

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deseq2 likelihood ratio rna seq wald test

updated 5.4 years ago by Michael Love 43k • written 5.4 years ago by adeler001 • 0

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1.2k

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volcano plot rna seq

updated 5.4 years ago by Michael Love 43k • written 5.4 years ago by adeler001 • 0

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1.6k

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limma voom RNA Seq Time-course experiments

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by mahes.muniandy • 0

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1.3k

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RNA seq wgcna

updated 5.7 years ago by Peter Langfelder ★ 3.0k • written 5.7 years ago by agustin.gonvi ▴ 20

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2.4k

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rna seq trimmomatic trimming adapter trimming paired analysis

5.8 years ago Mozart ▴ 30

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1.9k

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heatmap.2 hierarchical clustering microarray RNA seq DEG

7.0 years ago lawarde.ankita1 ▴ 30

13 results • Page 1 of 1

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Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by kahunroleh • 0

Yes, you can perform DEG analysis across two batches with one shared sample by using batch correction methods like ComBat or limma. These t…

Comment: displaying the differential expression with deseq2 over 4X2 samples with the in by Martijn • 0

thanks James, but if I do pairwise analyses per subject, I get the impression that I only get the intercepts per gene. Do you mean regardin…

Comment: plyranges: find exact GRanges match keeping metadata columns by alexis.weinreb • 0

Thank you, this does clarify the available options.

Answer: displaying the differential expression with deseq2 over 4X2 samples with the in by James W. MacDonald 67k

If you have paired data you should block on subject, which is algebraically the same as fitting a model on the difference between treated a…

Answer: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by jodan • 0

Your approach sounds solid! You might also consider plotting a scatter plot comparing log2 fold changes from both datasets to identify gene…

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Answer: Find exact GRanges match keeping metadata columns

Answer: Unused arguments error without used arguments in GSVA?

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