Showing : RNA seq • reset
0
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9
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4.1k
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How to create manhattan plot with DESeq2
deseq2 mahattan plot RNA Seq
updated 5.1 years ago by ▴ 150 • written 6.0 years ago by • 0
2
votes
5
replies
4.9k
views
Possible batch effect correction with RNA-Seq data when the batches do not contain both biological conditions for DE analysis
batch effect limma rna seq DE
updated 5.5 years ago by ★ 13k • written 5.6 years ago by ▴ 840
0
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3
replies
1.5k
views
Normalization of RNA seq data
RNA seq cpm
updated 5.6 years ago by ★ 4.0k • written 5.6 years ago by • 0
4
votes
4
replies
1.5k
views
Custom gene annotations for SGSeq
sgseq alternative splicing rna seq
updated 15 months ago by • 0 • written 5.9 years ago by • 0
1
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4
replies
1.3k
views
Difference between Fold Changes from EdgeR glmLRTest and directly calculated fold changes.
edger RNA Seq
updated 6.0 years ago by 68k • written 6.0 years ago by ▴ 30
0
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0
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815
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searching for specific RNA sequences
rna seq
6.0 years ago adeler001 • 0
0
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2
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1.4k
views
using only uniquely-mapping reads for alternative splicing using SGSeq
rna seq SGSeq Alternative splicing
updated 6.1 years ago by ▴ 260 • written 6.1 years ago by • 0
0
votes
1
reply
820
views
51 views DESeq2 RNAseq differential expression analysis
deseq2 likelihood ratio rna seq wald test
updated 6.1 years ago by 43k • written 6.1 years ago by • 0
0
votes
2
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1.4k
views
Need help cprrecting overlappinge genes on valcano plot
volcano plot rna seq
updated 6.2 years ago by 43k • written 6.2 years ago by • 0
1
vote
5
replies
1.9k
views
Time course experiment using limma with voom
limma voom RNA Seq Time-course experiments
updated 6.4 years ago by ★ 29k • written 6.4 years ago by • 0
5
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3
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1.7k
views
Steep dendrograms and few modules. WGCNA on RNA seq data
RNA seq wgcna
updated 6.4 years ago by ★ 3.0k • written 6.4 years ago by ▴ 20
1
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2
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2.7k
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adapter trimming paired vs unpaired reads
rna seq trimmomatic trimming adapter trimming paired analysis
6.5 years ago Mozart ▴ 30
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0
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2.2k
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Sub clustering from hierarchical cluster used to make heat map of gene expression data
heatmap.2 hierarchical clustering microarray RNA seq DEG
7.7 years ago lawarde.ankita1 ▴ 30
13 results • Page 1 of 1
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Comment: VariantAnnotation does escape = within header string quotes by Daniel Cameron ▴ 40
I'm just stripping the entire line as a workaround using `meta(header(vcf))$DRAGENCommandLine = NULL`. Not ideal but at least subsequent pa…
Comment: Setting up a DESeq2 Design with Paired Data by Alexander • 0
Hi Kevin, Firstly, thank you so much for not only a very prompt response, but one that is incredibly insightful and helps me learn DESeq2 …
Comment: featureCounts -L: high unassigned:mapq fraction by eja.gssssssse.r.m • 0
If you re looking to enjoy a fun mobile experience, the 3 patti vegas game offers a seamless way to play classic card games on your phone. …
Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif by Kevin Blighe ★ 4.0k
Hello Matthew, Thanks for the detailed description-this sounds like a classic challenge in sncRNA analysis, where piRNAs (and other tsRN…
Answer: VariantAnnotation does escape = within header string quotes by Kevin Blighe ★ 4.0k
Hi, Thanks for the minimal reproduction - this is very clear and confirms a bug in `VariantAnnotation::writeVcf()`. The issue is that th…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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