Bioconductor RNA seq

Showing : RNA seq • reset

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3.2k

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deseq2 mahattan plot RNA Seq

updated 4.1 years ago by bernatgel ▴ 150 • written 5.1 years ago by adeler001 • 0

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3.8k

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batch effect limma rna seq DE

updated 4.6 years ago by Steve Lianoglou ★ 13k • written 4.6 years ago by svlachavas ▴ 830

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888

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RNA seq cpm

updated 4.6 years ago by Kevin Blighe ★ 4.0k • written 4.6 years ago by isabel.pieterse • 0

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1.1k

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sgseq alternative splicing rna seq

updated 3 months ago by Sara • 0 • written 5.0 years ago by 116100016 • 0

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1.1k

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edger RNA Seq

updated 5.0 years ago by James W. MacDonald 67k • written 5.0 years ago by abf ▴ 30

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636

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rna seq

5.0 years ago adeler001 • 0

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952

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rna seq SGSeq Alternative splicing

updated 5.1 years ago by Leonard Goldstein ▴ 260 • written 5.1 years ago by 116100016 • 0

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660

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deseq2 likelihood ratio rna seq wald test

updated 5.1 years ago by Michael Love 42k • written 5.1 years ago by adeler001 • 0

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1.1k

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volcano plot rna seq

updated 5.2 years ago by Michael Love 42k • written 5.2 years ago by adeler001 • 0

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limma voom RNA Seq Time-course experiments

updated 5.4 years ago by Aaron Lun ★ 28k • written 5.4 years ago by mahes.muniandy • 0

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1.2k

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RNA seq wgcna

updated 5.4 years ago by Peter Langfelder ★ 3.0k • written 5.4 years ago by agustin.gonvi ▴ 20

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2.2k

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rna seq trimmomatic trimming adapter trimming paired analysis

5.5 years ago Mozart ▴ 30

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1.8k

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heatmap.2 hierarchical clustering microarray RNA seq DEG

6.7 years ago lawarde.ankita1 ▴ 30

13 results • Page 1 of 1

Recent ...

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Comment: Differential Expression Analysis with unbalanced batches without replication bet by Thili • 0

Thank you for your reply. I currently have batch-corrected data processed with scvi-tools (specifically, totalvi) and have followed the sam…

Comment: Problem at champ.load by andrew.gibbons • 0

I'd love to know if anyone has a workaround too. I've tried rolling back ChAMP and R to the previous versions that others have said work wi…

Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0

Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…

Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k

> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

Awards • All

Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k