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RNA seq
•
reset
0
votes
9
replies
4.1k
views
How to create manhattan plot with DESeq2
deseq2
mahattan plot
RNA Seq
updated 5.2 years ago by
bernatgel
▴ 150 • written 6.2 years ago by
adeler001
• 0
2
votes
5
replies
5.1k
views
Possible batch effect correction with RNA-Seq data when the batches do not contain both biological conditions for DE analysis
batch effect
limma
rna seq
DE
updated 5.7 years ago by
Steve Lianoglou
★ 13k • written 5.7 years ago by
svlachavas
▴ 840
0
votes
3
replies
1.6k
views
Normalization of RNA seq data
RNA seq
cpm
updated 5.7 years ago by
Kevin Blighe
★ 4.0k • written 5.7 years ago by
isabel.pieterse
• 0
4
votes
4
replies
1.6k
views
Custom gene annotations for SGSeq
sgseq
alternative splicing
rna seq
updated 17 months ago by
Sara
• 0 • written 6.1 years ago by
116100016
• 0
1
vote
4
replies
1.4k
views
Difference between Fold Changes from EdgeR glmLRTest and directly calculated fold changes.
edger
RNA Seq
updated 6.1 years ago by
James W. MacDonald
68k • written 6.1 years ago by
abf
▴ 30
0
votes
0
replies
839
views
searching for specific RNA sequences
rna seq
6.1 years ago
adeler001
• 0
0
votes
2
replies
1.4k
views
using only uniquely-mapping reads for alternative splicing using SGSeq
rna seq
SGSeq
Alternative splicing
updated 6.2 years ago by
Leonard Goldstein
▴ 260 • written 6.2 years ago by
116100016
• 0
0
votes
1
reply
859
views
51 views DESeq2 RNAseq differential expression analysis
deseq2
likelihood ratio
rna seq
wald test
updated 6.3 years ago by
Michael Love
43k • written 6.3 years ago by
adeler001
• 0
0
votes
2
replies
1.5k
views
Need help cprrecting overlappinge genes on valcano plot
volcano plot
rna seq
updated 6.3 years ago by
Michael Love
43k • written 6.3 years ago by
adeler001
• 0
1
vote
5
replies
2.0k
views
Time course experiment using limma with voom
limma
voom
RNA Seq
Time-course experiments
updated 6.5 years ago by
Aaron Lun
★ 29k • written 6.5 years ago by
mahes.muniandy
• 0
5
votes
3
replies
1.7k
views
Steep dendrograms and few modules. WGCNA on RNA seq data
RNA seq
wgcna
updated 6.6 years ago by
Peter Langfelder
★ 3.0k • written 6.6 years ago by
agustin.gonvi
▴ 20
1
vote
2
replies
2.8k
views
adapter trimming paired vs unpaired reads
rna seq
trimmomatic
trimming
adapter trimming
paired analysis
6.7 years ago
Mozart
▴ 30
0
votes
0
replies
2.2k
views
Sub clustering from hierarchical cluster used to make heat map of gene expression data
heatmap.2
hierarchical clustering
microarray
RNA seq
DEG
7.9 years ago
lawarde.ankita1
▴ 30
13 results • Page
1 of 1
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Comment: nice 3D displays for PCA analysis
by
adam80haynes
• 0
That's a fascinating application of 3D printing in a scientific context. Using this technology to create custom lab equipment, models of mo…
Comment: Bioinformatician at the Lausanne University Hospital
by
TikTsokaasocissalpc
• 0
The Random Word Generator in Italian is a useful tool for generating ideas and exploring new approaches, much like the innovative research …
Comment: DECIPHER DesignProbes unable to design FISH-probes
by
TikTsokaasocissalpc
• 0
If you want to share your research progress and microbiome discoveries with colleagues or friends, [snaptroid android][1] download free mak…
Answer: Limma-voom sample weights and impact on DEG numbers
by
Gordon Smyth
53k
I recommend that you always use voomLmFit() instead of the earlier voom() or voomWithQualityWeights() functions. Personally, I would use sa…
Answer: wgcna module preseravtion taking too long?
by
ATpoint
★ 5.0k
WGCNA is not a Bioconductor package, you won't get an answer here. Consider biostars.org or the r/bioinformatics reddit. Note that 10 sampl…
Votes
Limma-voom sample weights and impact on DEG numbers
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
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