Bioconductor RNA seq

Showing : RNA seq • reset

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4.0k

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deseq2 mahattan plot RNA Seq

updated 4.9 years ago by bernatgel ▴ 150 • written 5.9 years ago by adeler001 • 0

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4.8k

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batch effect limma rna seq DE

updated 5.4 years ago by Steve Lianoglou ★ 13k • written 5.4 years ago by svlachavas ▴ 840

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1.4k

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RNA seq cpm

updated 5.4 years ago by Kevin Blighe ★ 4.0k • written 5.4 years ago by isabel.pieterse • 0

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1.4k

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sgseq alternative splicing rna seq

updated 13 months ago by Sara • 0 • written 5.8 years ago by 116100016 • 0

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1.3k

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edger RNA Seq

updated 5.8 years ago by James W. MacDonald 68k • written 5.8 years ago by abf ▴ 30

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788

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rna seq

5.8 years ago adeler001 • 0

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1.3k

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rna seq SGSeq Alternative splicing

updated 5.9 years ago by Leonard Goldstein ▴ 260 • written 5.9 years ago by 116100016 • 0

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787

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deseq2 likelihood ratio rna seq wald test

updated 6.0 years ago by Michael Love 43k • written 6.0 years ago by adeler001 • 0

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1.3k

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volcano plot rna seq

updated 6.1 years ago by Michael Love 43k • written 6.1 years ago by adeler001 • 0

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1.8k

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limma voom RNA Seq Time-course experiments

updated 6.2 years ago by Aaron Lun ★ 29k • written 6.3 years ago by mahes.muniandy • 0

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1.6k

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RNA seq wgcna

updated 6.3 years ago by Peter Langfelder ★ 3.0k • written 6.3 years ago by agustin.gonvi ▴ 20

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2.6k

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rna seq trimmomatic trimming adapter trimming paired analysis

6.4 years ago Mozart ▴ 30

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2.1k

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heatmap.2 hierarchical clustering microarray RNA seq DEG

7.6 years ago lawarde.ankita1 ▴ 30

13 results • Page 1 of 1

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Comment: Postdoctoral Research Position in Cancer Genomics at Dana-Farber Cancer Institut by Agatha • 0

A postdoctoral position in cancer genomics at the Guo-Cheng Yuan Lab sounds like an amazing career move. Their work combines computational …

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k

MDS of what quantity? LogCPM from `cpm()`? I don't have a definitive answer, but my feeling that is that library size effects are to be ex…

Comment: Merge multiple genomic intervals if overlapping more than xx percents by Lime • 0

I think this site is very useful if you are doing similar work (genomic intervals, peaks, ChIP-seq, etc.) because: There is sample code tha…

Comment: How to do simple Fisher' exact test for overlapped genomic interval in R? by Mina • 0

If I were you, I would do the following to make sure: Collect the overlapping regions into two BED files or two datasets. Use bedtools merg…

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by abaed • 0

Apologies for not clarifying earlier, you're right: it is a PCA, not an MDS. In local machine, computing the MDS takes quite a long time, P…