Bioconductor RNA seq

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2.6k

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deseq2 mahattan plot RNA Seq

updated 3.6 years ago by bernatgel ▴ 150 • written 4.5 years ago by adeler001 • 0

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1.3k

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limma voom RNA Seq Time-course experiments

updated 4.9 years ago by Aaron Lun ★ 28k • written 4.9 years ago by mahes.muniandy • 0

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3.2k

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batch effect limma rna seq DE

updated 4.0 years ago by Steve Lianoglou ★ 13k • written 4.0 years ago by svlachavas ▴ 830

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893

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edger RNA Seq

updated 4.4 years ago by James W. MacDonald 65k • written 4.4 years ago by abf ▴ 30

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885

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sgseq alternative splicing rna seq

updated 4.4 years ago by Leonard Goldstein ▴ 200 • written 4.4 years ago by 116100016 • 0

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962

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RNA seq wgcna

updated 4.9 years ago by Peter Langfelder ★ 3.0k • written 4.9 years ago by agustin.gonvi ▴ 20

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649

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RNA seq cpm

updated 4.1 years ago by Kevin Blighe ★ 3.9k • written 4.1 years ago by isabel.pieterse • 0

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776

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rna seq SGSeq Alternative splicing

updated 4.6 years ago by Leonard Goldstein ▴ 200 • written 4.6 years ago by 116100016 • 0

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1.9k

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rna seq trimmomatic trimming adapter trimming paired analysis

5.0 years ago Mozart ▴ 30

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947

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volcano plot rna seq

updated 4.7 years ago by Michael Love 41k • written 4.7 years ago by adeler001 • 0

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550

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deseq2 likelihood ratio rna seq wald test

updated 4.6 years ago by Michael Love 41k • written 4.6 years ago by adeler001 • 0

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497

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rna seq

4.5 years ago adeler001 • 0

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1.6k

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heatmap.2 hierarchical clustering microarray RNA seq DEG

6.2 years ago lawarde.ankita1 ▴ 30

13 results • Page 1 of 1

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Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0

Thank you Tim, this is a great help in getting me started!

Comment: Too many significant genes when integrating gtex and tcga by Michael Love 41k

Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…

Answer: Too many significant genes when integrating gtex and tcga by James W. MacDonald 65k

See `?results`, in particular the lfcThreshold argument.

Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k

You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…

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Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

A: Print Differentially Expressed Exons From Dexseq Results

stuck on unimplemented type 'list' in 'EncodeElement'

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