Bioconductor RNASeqRData

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Deseq2 RNASeqRData unbalancedsamplesize

updated 23 months ago by Michael Love 41k • written 3.2 years ago by Cihat • 0

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RNASeqRData GO

3.2 years ago Wuschel ▴ 10

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RiboProfiling DESeq2 Bioconductor RNASeqRData

updated 18 months ago by Kevin Blighe ★ 3.9k • written 3.2 years ago by Taufiq • 0

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672

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find RNASeqRData

updated 18 months ago by ATpoint ★ 4.1k • written 18 months ago by yuhang • 0

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RNASeqRData TPM

updated 19 months ago by ATpoint ★ 4.1k • written 19 months ago by prashali.bansal ▴ 10

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805

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microRNA gene RNASeqRData edgeR geneontology

18 months ago faiza • 0

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RNASeqRData edgeR RNASeqR RNASeqData

updated 2.2 years ago by Gordon Smyth 50k • written 2.2 years ago by vikycairoli • 0

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881

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RNASeqRData combat_Seq BatchEffect

2.6 years ago • updated 2.3 years ago zeegzaag • 0

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734

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RNAinteract rnaseqGene RNASeqRData rnaseqcomp

3.2 years ago Bogdan ▴ 670

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861

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RNASeqRData limma RNASeq RNASeqR

updated 3.1 years ago by Gordon Smyth 50k • written 3.1 years ago by Rita • 0

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3.2k

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RNASeqRData

updated 2.1 years ago by Michael Love 41k • written 2.1 years ago by beslinail • 0

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RNASeq RNASeqData RNASeqRData

19 months ago marymshahi2021 • 0

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600

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RNAseqRData DeSeq2

updated 2.1 years ago by Michael Love 41k • written 2.1 years ago by Hannah • 0

13 results • Page 1 of 1

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Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position) by Yveto • 0

Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…

Answer: More regions in union when increasing DBA$config$mergeOverlap by Rory Stark ★ 5.2k

I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …

Comment: log2FoldChange value is way too different when compared with counts(dds) by Michael Love 41k

But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…

Comment: log2FoldChange value is way too different when compared with counts(dds) by HAK • 0

Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…

Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call by ATpoint ★ 4.1k

Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…

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Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

SPIA plotP giving error

Answer: Fold change calculation in Diffbind vs. DESEQ2?

C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB

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Scholar to Rory Stark ★ 5.2k

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