Bioconductor RNAseqRData

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microRNA gene RNASeqRData edgeR geneontology

3.3 years ago faiza • 0

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1.3k

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find RNASeqRData

updated 3.3 years ago by ATpoint ★ 5.0k • written 3.3 years ago by yuhang • 0

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RNASeqRData TPM

updated 3.4 years ago by ATpoint ★ 5.0k • written 3.4 years ago by prashali.bansal ▴ 10

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796

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RNASeq RNASeqData RNASeqRData

3.4 years ago marymshahi2021 • 0

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RNAseqRData DeSeq2

updated 3.9 years ago by Michael Love 43k • written 3.9 years ago by Hannah • 0

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RNASeqRData

updated 3.9 years ago by Michael Love 43k • written 3.9 years ago by beslinail • 0

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RNASeqRData edgeR RNASeqR RNASeqData

updated 4.0 years ago by Gordon Smyth 53k • written 4.0 years ago by vikycairoli • 0

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1.4k

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RNASeqRData combat_Seq BatchEffect

4.4 years ago • updated 4.1 years ago zeegzaag • 0

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1.3k

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RNASeqRData limma RNASeq RNASeqR

updated 4.9 years ago by Gordon Smyth 53k • written 4.9 years ago by Rita • 0

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RNASeqRData GO

5.0 years ago Wuschel ▴ 10

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1.2k

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RNAinteract rnaseqGene RNASeqRData rnaseqcomp

5.0 years ago Bogdan ▴ 670

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1.8k

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Deseq2 RNASeqRData unbalancedsamplesize

updated 3.7 years ago by Michael Love 43k • written 5.0 years ago by Cihat • 0

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RiboProfiling DESeq2 Bioconductor RNASeqRData

updated 3.3 years ago by Kevin Blighe ★ 4.0k • written 5.0 years ago by Taufiq • 0

13 results • Page 1 of 1

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Comment: Which preprocessing steps are needed before running limpa? by miro165sabo • 0

Hi @gordonsmyth, thank you a lot for very fast and valuable response. I edited the question to provide more details.

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k

I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…

Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k

Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0

Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…

Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0

Hello, I was also wondering about the same issue. Did you figure it out?

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Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

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Scholar to Gordon Smyth 53k

Popular Question to Peter Hickey ▴ 760