Bioconductor RUVnormalize

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RUVSeq RUVnormalize

10 months ago Erdi ▴ 10

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399

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RUVSeq RUVnormalize

12 months ago Ειρήνη • 0

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1.3k

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DESeq2 NanoStringNCTools RUVnormalize RUVSeq DifferentialExpression

2.1 years ago AZ ▴ 30

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3.3k

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RUVnormalize R edgeR RUVSeq RUVnormalizeData

2.9 years ago Mohamed ▴ 30

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786

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RUVnormalize protein mi

6.6 years ago losik • 0

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1.3k

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RUVnormalize limma corrected expression matrix microarray

updated 7.3 years ago by Dario Strbenac ★ 1.6k • written 7.3 years ago by massimo.acquaviva.78 • 0

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3.2k

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ruv ruvseq ruvnormalize single-cell zero-inflated

updated 7.8 years ago by davide risso ▴ 980 • written 7.8 years ago by Nik Tuzov ▴ 90

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3.0k

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RUV ruvseq ruvr ruvnormalize single cell

7.8 years ago Nik Tuzov ▴ 90

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1.6k

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edger ruvseq rnaseq normalization ruvnormalize

updated 7.9 years ago by davide risso ▴ 980 • written 7.9 years ago by manish20072013 • 0

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1.9k

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ruvseq RUV ruvnormalize ruvg

8.8 years ago anthonycolombo60 • 0

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1.9k

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normalization ruvseq ruvnormalize ruvs eda

9.1 years ago • updated 9.0 years ago thomas.wolfe • 0

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1.6k

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rnaseq ruvnormalize normalization technical replicates

9.4 years ago thomas.wolfe • 0

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1.5k

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ruvnormalize microarray normalization

updated 9.9 years ago by laurent.jacob ▴ 10 • written 9.9 years ago by Cornwell, Adam ▴ 110

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1.5k

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RUVNormalize Subsetting

updated 9.9 years ago by laurent.jacob ▴ 10 • written 10.0 years ago by Dario Strbenac ★ 1.6k

14 results • Page 1 of 1

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Comment: limma::voom vs edgeR::voomLmFit - when to use? by Gordon Smyth 52k

voomLmFit() is in edgeR instead of limma because it needs to call edgeR::glmFit() internally to determine which of the zero observations al…

Comment: limma::voom vs edgeR::voomLmFit - when to use? by Geoff • 0

Just wondering--why was this function put into `edgeR` rather than `limma`? Maybe a bit technical, but it is a little confusing from an out…

Comment: cannot download atena annotation for human by Davide • 0

Hi Robert, I was able to solve the problem. Indeed, it stems from the co-occurrence of two different AnnotationHub available for hg38. …

Comment: Setting ylims in bam coverage plot and assigning compound sashimi numbers to ove by macdonaldfrench7286566 • 0

Regarding the ylim for the coverage [space waves][1], have you tried accessing the ylim slot of the CoverageTrack object after you've creat…

Comment: How to left_join a tidySummarizedExperiment with a GRanges object by seqnames an by Kateřina • 0

I unfortunately haven't. Non-tidy grammar is fine, but I have wanted to use tidy-only grammar. Thank you nonetheless!

Votes

Answer: DESeq2 Apeglm Coefficient Reordering / Log2FoldChange Comparison Change

Answer: GAlignments Cigar to GRanges

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