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RUVnormalize
•
reset
1
vote
2
replies
524
views
Removing Unwanted Variations
DESeq2
NanoStringNCTools
RUVnormalize
RUVSeq
DifferentialExpression
7 months ago
AZ
▴ 30
0
votes
4
replies
1.7k
views
Confused about using RUVg in getting negative control genes using RUVg
RUVnormalize
R
edgeR
RUVSeq
RUVnormalizeData
17 months ago
Mohamed
▴ 20
0
votes
1
reply
536
views
Is RUVnormalize applicable to small dataset?
RUVnormalize
protein mi
5.1 years ago
losik
• 0
0
votes
2
replies
867
views
RUVnormalize- How to output a corrected expression matrix without negative values to use for DEG analysis(i.e. limma) ?
RUVnormalize
limma
corrected expression matrix
microarray
updated 5.9 years ago by
Dario Strbenac
★ 1.5k • written 5.9 years ago by
massimo.acquaviva.78
• 0
2
votes
9
replies
2.3k
views
Zero inflation in RUV normalization and DE for single cell data
ruv
ruvseq
ruvnormalize
single-cell
zero-inflated
updated 6.3 years ago by
davide risso
▴ 930 • written 6.3 years ago by
Nik Tuzov
▴ 80
1
vote
3
replies
2.0k
views
Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV
ruvseq
ruvr
ruvnormalize
single cell
6.3 years ago
Nik Tuzov
▴ 80
2
votes
1
reply
1.2k
views
Decide normalisation method in RUVseq for RNAseq data
edger
ruvseq
rnaseq
normalization
ruvnormalize
updated 6.5 years ago by
davide risso
▴ 930 • written 6.5 years ago by
manish20072013
• 0
2
votes
1
reply
1.4k
views
RUVSeq empirical negative controls? how many to take to find the span set
ruvseq
RUV
ruvnormalize
ruvg
7.4 years ago
anthonycolombo60
• 0
2
votes
6
replies
1.3k
views
effect of polyploidy level on RUVs normalisation
normalization
ruvseq
ruvnormalize
ruvs eda
7.6 years ago
thomas.wolfe
• 0
0
votes
0
replies
1.2k
views
Technical Replicates and RUVs Normalisation
rnaseq
ruvnormalize
normalization
technical replicates
8.0 years ago
thomas.wolfe
• 0
1
vote
1
reply
1.2k
views
RUVnormalize- should input be pre-normalized?
ruvnormalize
microarray
normalization
updated 8.4 years ago by
laurent.jacob
▴ 10 • written 8.5 years ago by
Cornwell, Adam
▴ 110
2
votes
1
reply
1.1k
views
naiveRandRUV Error When k is 1
RUVNormalize
Subsetting
updated 8.4 years ago by
laurent.jacob
▴ 10 • written 8.5 years ago by
Dario Strbenac
★ 1.5k
12 results • Page
1 of 1
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Replies
Comment: DuplicateCorrelation() block by duplicate sample or by cell line ?
by
Gordon Smyth
49k
They are not technical replicates. With the `Exposure+CellLine` model, your experiment has only one level of variability so there is no pos…
Comment: DuplicateCorrelation() block by duplicate sample or by cell line ?
by
Gimena
• 0
Hi James, Yes, these are complete cases. every line has all the treatment groups and technical replicates.
Comment: DuplicateCorrelation() block by duplicate sample or by cell line ?
by
Gimena
• 0
I am sorry for the confusion. It goes like this: 3 drug exposures (vehicle, low and high dose) x 2 replicates per condition: technical re…
Comment: How does Deseq2 deal with the row with zero when calculating size factors
by
jiakang
• 0
Thanks for your quick reply. I understand and have noticed the code you mentioned above. > the size factors results of sfType = "poscount…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Yes. I considered genome wide p value as cutoff.
Votes
Attempting to import SBML file using R
Answer: RNASeq time course analysis, missing time points for control
Answer: biomaRt not working - lazy table error
Answer: Confused about the CPM and TMM normalization in edgeR
Answer: Differential gene expression analysis
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