Showing : RUVnormalize • reset
1
vote
2
replies
524
views
Removing Unwanted Variations
DESeq2 NanoStringNCTools RUVnormalize RUVSeq DifferentialExpression
7 months ago AZ ▴ 30
0
votes
4
replies
1.7k
views
Confused about using RUVg in getting negative control genes using RUVg
RUVnormalize R edgeR RUVSeq RUVnormalizeData
17 months ago Mohamed ▴ 20
0
votes
1
reply
536
views
Is RUVnormalize applicable to small dataset?
RUVnormalize protein mi
5.1 years ago losik • 0
0
votes
2
replies
867
views
RUVnormalize- How to output a corrected expression matrix without negative values to use for DEG analysis(i.e. limma) ?
RUVnormalize limma corrected expression matrix microarray
updated 5.9 years ago by ★ 1.5k • written 5.9 years ago by • 0
2
votes
9
replies
2.3k
views
Zero inflation in RUV normalization and DE for single cell data
ruv ruvseq ruvnormalize single-cell zero-inflated
updated 6.3 years ago by ▴ 930 • written 6.3 years ago by ▴ 80
1
vote
3
replies
2.0k
views
Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV ruvseq ruvr ruvnormalize single cell
6.3 years ago Nik Tuzov ▴ 80
2
votes
1
reply
1.2k
views
Decide normalisation method in RUVseq for RNAseq data
edger ruvseq rnaseq normalization ruvnormalize
updated 6.5 years ago by ▴ 930 • written 6.5 years ago by • 0
2
votes
1
reply
1.4k
views
RUVSeq empirical negative controls? how many to take to find the span set
ruvseq RUV ruvnormalize ruvg
7.4 years ago anthonycolombo60 • 0
2
votes
6
replies
1.3k
views
effect of polyploidy level on RUVs normalisation
normalization ruvseq ruvnormalize ruvs eda
7.6 years ago thomas.wolfe • 0
0
votes
0
replies
1.2k
views
Technical Replicates and RUVs Normalisation
rnaseq ruvnormalize normalization technical replicates
8.0 years ago thomas.wolfe • 0
1
vote
1
reply
1.2k
views
RUVnormalize- should input be pre-normalized?
ruvnormalize microarray normalization
updated 8.4 years ago by ▴ 10 • written 8.5 years ago by ▴ 110
2
votes
1
reply
1.1k
views
naiveRandRUV Error When k is 1
RUVNormalize Subsetting
updated 8.4 years ago by ▴ 10 • written 8.5 years ago by ★ 1.5k
12 results • Page 1 of 1
Recent ...
Replies
Comment: DuplicateCorrelation() block by duplicate sample or by cell line ? by Gordon Smyth 49k
They are not technical replicates. With the `Exposure+CellLine` model, your experiment has only one level of variability so there is no pos…
Comment: DuplicateCorrelation() block by duplicate sample or by cell line ? by Gimena • 0
Hi James, Yes, these are complete cases. every line has all the treatment groups and technical replicates.
Comment: DuplicateCorrelation() block by duplicate sample or by cell line ? by Gimena • 0
I am sorry for the confusion. It goes like this: 3 drug exposures (vehicle, low and high dose) x 2 replicates per condition: technical re…
Comment: How does Deseq2 deal with the row with zero when calculating size factors by jiakang • 0
Thanks for your quick reply. I understand and have noticed the code you mentioned above. > the size factors results of sfType = "poscount…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
Yes. I considered genome wide p value as cutoff.
Votes
Attempting to import SBML file using R
Answer: RNASeq time course analysis, missing time points for control
Answer: biomaRt not working - lazy table error
Answer: Confused about the CPM and TMM normalization in edgeR
Answer: Differential gene expression analysis
Awards • All
Popular Question to Bine ▴ 20
Popular Question to Robert Castelo ★ 3.0k
Popular Question to ramonfallon ▴ 20
Popular Question to Poonam • 0
Scholar to James W. MacDonald 64k
Locations • All
WEHI, Melbourne, Australia, 18 minutes ago
United States, 18 minutes ago
WEHI, Melbourne, Australia, 21 minutes ago
Hong Kong, 49 minutes ago
The city by the bay, 52 minutes ago
Traffic: 768 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6