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News:
List of Deprecated Packages for Bioc3.19
Release
Devel
ExperimentData
Software
9 weeks ago • updated 11 days ago
shepherl
3.9k
1
vote
8
replies
1.5k
views
News:
Final List of Deprecated Package Bioc 3.9
deprecation
release
software
experimentData
News
written 5.1 years ago by
shepherl
3.9k
5
votes
1
reply
439
views
News:
Bioconductor 3.18 is Released!
Packages
Bioconductor
Release
Software
written 6 months ago by
shepherl
3.9k
1
vote
4
replies
551
views
rnaSeqGene workflow not available in Bioconductor 3.18
rnaseqGene
Bioconductor3.18
DifferentialExpression
release
updated 5 months ago by
Michael Love
41k • written 6 months ago by
Nadine
▴ 60
0
votes
1
reply
266
views
News:
Bioconductor 3.19 Release Schedule
Release
release
Software
8 weeks ago • updated 5 weeks ago
shepherl
3.9k
0
votes
2
replies
1.1k
views
News:
Final List of Deprecated Packages for Bioc3.7
deprecate
package
release
News
written 6.1 years ago by
shepherl
3.9k
0
votes
4
replies
734
views
News:
Important Bioconductor Release 3.18 deadlines this week
Release
Devel
release
devel
updated 6 months ago by
Guido Hooiveld
★ 3.9k • written 6 months ago by
shepherl
3.9k
3
votes
0
replies
62
views
News:
Bioconductor 3.19 is Released!
Release
Bioconductor
Packages
Software
3 days ago
shepherl
3.9k
1
vote
0
replies
400
views
News:
Bioconductor 3.18 db0s, OrgDbs, and TxDbs now available
db0
release
Annotation
7 months ago
kayla.interdonato
▴ 160
0
votes
0
replies
423
views
News:
Bioconductor 3.18 Release Schedule
Release
Software
release
8 months ago
shepherl
3.9k
0
votes
1
reply
219
views
Rcpp compilation error
Release
Rcpp
updated 8 weeks ago by
ATpoint
★ 4.1k • written 8 weeks ago by
Robert K. Bradley
▴ 40
0
votes
0
replies
84
views
News:
Important Release 3.18 Freeze Announcment
Release
release
Bioconductor
Bioconducto
22 days ago
shepherl
3.9k
0
votes
0
replies
232
views
News:
Note about packages submitted for Bioconductor 3.19
Release
Submission
release
Bioconductor
3 months ago
shepherl
3.9k
13 results • Page
1 of 1
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Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024). In the meantime, you could consider using the goana() and kegga() …
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
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Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
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