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Rmarkdown
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3
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3
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16k
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Error in Knit R Markdown document (could not find function "Biocexptpkg")
rmarkdown
rstudio
knitr
7.6 years ago
Jon Bråte
▴ 250
3
votes
3
replies
2.0k
views
Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chunk
rmarkdown
suppressWarning
warning
updated 14 months ago by
Mike Smith
★ 6.5k • written 2.4 years ago by
Wolfgang Huber
★ 13k
0
votes
2
replies
3.6k
views
Error in file.choose() : file choice cancelled
package development
bioconductor
rstudio
rmarkdown
vignettes
6.5 years ago
clarisbaby
• 0
3
votes
2
replies
1.7k
views
Issue with pandoc-citeproc when rendering the f1000 article Rmd file from BiocWorkFlowTools
BiocWorkflowTools
rmarkdown
updated 6.9 years ago by
Andrzej Oleś
▴ 750 • written 6.9 years ago by
Leonardo Collado Torres
★ 1.0k
10
votes
3
replies
3.1k
views
News:
Updates to BiocStyle formatting
BiocStyle
vignettes
rmarkdown
latex
News
6.8 years ago • updated 6.7 years ago
Andrzej Oleś
▴ 750
0
votes
2
replies
3.4k
views
installation of package 'rmarkdown' had non-zero exit status
rmarkdown
package updates
updated 7.7 years ago by
James W. MacDonald
65k • written 7.7 years ago by
tarek.mohamed
▴ 10
1
vote
1
reply
1.1k
views
Best practices for sharing RMarkdown-based supplemental PDFs?
rmarkdown
knitr
updated 5.2 years ago by
Aaron Lun
★ 28k • written 5.2 years ago by
Keith Hughitt
▴ 180
1
vote
2
replies
1.4k
views
Display BrowseSeqs output in R Notebook?
BrowseSeqs
DECIPHER
notebook
rmarkdown
updated 4.7 years ago by
Erik Wright
▴ 150 • written 4.7 years ago by
lauren.fitch
• 0
1
vote
1
reply
1.2k
views
Having issues mapping gene Ids during ReportingTools::publish() from Bioconductor.
ReportingTools
RNA-Seq
RMarkdown
updated 3.7 years ago by
James W. MacDonald
65k • written 3.7 years ago by
anthony.nash
▴ 20
6
votes
1
reply
3.2k
views
Tutorial:
BoF "Writing papers in Rmarkdown, BiocStyle... (and books, posters)"
biocstyle
Rmarkdown
Tutorial
6.8 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
622
views
Author footnotes in BiocWorkflowTools::f1000_article template
BiocWorkflowTools
rmarkdown
3.9 years ago
helucro
▴ 70
11 results • Page
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Comment: Limma without eBayes, is it indistunguishable from Ordinary Least Square?
by
nbay13
• 0
yes my mistake I mixed the equation up while copying into the reply box. Should have been: ```{r} 2 * (1 - pt(abs(tstat), df = df.residual…
Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
angelathuynh5
• 0
Thank you for your response. To clarify, the process of making a heatmap performs rowscaling so it takes the value - (mean/std). And to res…
Comment: Limma without eBayes, is it indistunguishable from Ordinary Least Square?
by
Gordon Smyth
50k
The formula given in the original question is correct and yours is not. Your formula isn't even constrained to be between 0 and 1. Here is …
Comment: Limma without eBayes, is it indistunguishable from Ordinary Least Square?
by
nbay13
• 0
EDIT: removed
Comment: Method to find pathways different between 2 groups
by
Gordon Smyth
50k
sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…
Votes
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
Answer: Extremely small p-values using Limma for proteomic data
Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
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Gyan Prakash Mishra
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50k
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42k
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★ 1.6k
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