Showing : RMarkdown • reset
2
votes
2
replies
356
views
Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chunk
rmarkdown suppressWarning warning
5 months ago • updated 4 months ago Wolfgang Huber 13k
1
vote
1
reply
449
views
Having issues mapping gene Ids during ReportingTools::publish() from Bioconductor.
ReportingTools RNA-Seq RMarkdown
updated 20 months ago by 59k • written 20 months ago by ▴ 20
0
votes
0
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205
views
Author footnotes in BiocWorkflowTools::f1000_article template
BiocWorkflowTools rmarkdown
23 months ago Helena Crowell ▴ 30
1
vote
2
replies
588
views
Display BrowseSeqs output in R Notebook?
BrowseSeqs DECIPHER notebook rmarkdown
updated 2.7 years ago by ▴ 150 • written 2.7 years ago by • 0
1
vote
1
reply
574
views
Best practices for sharing RMarkdown-based supplemental PDFs?
rmarkdown knitr
updated 3.3 years ago by ★ 27k • written 3.3 years ago by ▴ 150
0
votes
2
replies
2.2k
views
Error in file.choose() : file choice cancelled
package development bioconductor rstudio rmarkdown vignettes
4.5 years ago clarisbaby • 0
10
votes
3
replies
2.3k
views
News: Updates to BiocStyle formatting
BiocStyle vignettes rmarkdown latex News
4.8 years ago Andrzej Oleś ▴ 750
6
votes
1
reply
2.2k
views
Tutorial: BoF "Writing papers in Rmarkdown, BiocStyle... (and books, posters)"
biocstyle Rmarkdown Tutorial
4.8 years ago Wolfgang Huber 13k
3
votes
2
replies
1.1k
views
Issue with pandoc-citeproc when rendering the f1000 article Rmd file from BiocWorkFlowTools
BiocWorkflowTools rmarkdown
updated 4.9 years ago by ▴ 750 • written 4.9 years ago by ▴ 980
3
votes
3
replies
13k
views
Error in Knit R Markdown document (could not find function "Biocexptpkg")
rmarkdown rstudio knitr
5.6 years ago Jon Bråte ▴ 190
0
votes
2
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2.6k
views
installation of package 'rmarkdown' had non-zero exit status
rmarkdown package updates
updated 5.8 years ago by 59k • written 5.8 years ago by ▴ 10
11 results • Page 1 of 1
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Comment: broken chain import in liftOver by Marcel Ramos 570
You could also try using one of the chain files in `AnnotationHub`, which gets auto-cached: ```r library(AnnotationHub) query(ah <- Annot…
Answer: paired analysis : return data matrix with indvidual/subject effects eliminated. by James W. MacDonald 59k
See `removeBatchEffect` in the `limma` package.
Comment: GDCdownload Directory Problem :( by Marcel Ramos 570
FWIW, `TCGAutils` is not a related package.
Comment: help please！ by 1051444231 • 0
I have updated Rtools
Comment: help please！ by 1051444231 • 0
> BiocManager::install("AnnotationDbi",force = TRUE) 'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' …
Votes
Answer: broken chain import in liftOver
Answer: toGRanges help!
Answer: toGRanges help!
Comment: CPM after RUVseq
A: Using the plotting functions of clusterProfiler / enrichplot with enrichment res
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Popular Question to svlachavas ▴ 780
Scholar to Guido Hooiveld ★ 3.2k
Teacher to Gordon Smyth 45k
Teacher to Aaron Lun ★ 27k
Scholar to James W. MacDonald 59k
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