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RMarkdown
•
reset
2
votes
2
replies
356
views
Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chunk
rmarkdown
suppressWarning
warning
5 months ago • updated 4 months ago
Wolfgang Huber
13k
1
vote
1
reply
449
views
Having issues mapping gene Ids during ReportingTools::publish() from Bioconductor.
ReportingTools
RNA-Seq
RMarkdown
updated 20 months ago by
James W. MacDonald
59k • written 20 months ago by
anthony.nash
▴ 20
0
votes
0
replies
205
views
Author footnotes in BiocWorkflowTools::f1000_article template
BiocWorkflowTools
rmarkdown
23 months ago
Helena Crowell
▴ 30
1
vote
2
replies
588
views
Display BrowseSeqs output in R Notebook?
BrowseSeqs
DECIPHER
notebook
rmarkdown
updated 2.7 years ago by
Erik Wright
▴ 150 • written 2.7 years ago by
lauren.fitch
• 0
1
vote
1
reply
574
views
Best practices for sharing RMarkdown-based supplemental PDFs?
rmarkdown
knitr
updated 3.3 years ago by
Aaron Lun
★ 27k • written 3.3 years ago by
Keith Hughitt
▴ 150
0
votes
2
replies
2.2k
views
Error in file.choose() : file choice cancelled
package development
bioconductor
rstudio
rmarkdown
vignettes
4.5 years ago
clarisbaby
• 0
10
votes
3
replies
2.3k
views
News:
Updates to BiocStyle formatting
BiocStyle
vignettes
rmarkdown
latex
News
4.8 years ago
Andrzej Oleś
▴ 750
6
votes
1
reply
2.2k
views
Tutorial:
BoF "Writing papers in Rmarkdown, BiocStyle... (and books, posters)"
biocstyle
Rmarkdown
Tutorial
4.8 years ago
Wolfgang Huber
13k
3
votes
2
replies
1.1k
views
Issue with pandoc-citeproc when rendering the f1000 article Rmd file from BiocWorkFlowTools
BiocWorkflowTools
rmarkdown
updated 4.9 years ago by
Andrzej Oleś
▴ 750 • written 4.9 years ago by
Leonardo Collado Torres
▴ 980
3
votes
3
replies
13k
views
Error in Knit R Markdown document (could not find function "Biocexptpkg")
rmarkdown
rstudio
knitr
5.6 years ago
Jon Bråte
▴ 190
0
votes
2
replies
2.6k
views
installation of package 'rmarkdown' had non-zero exit status
rmarkdown
package updates
updated 5.8 years ago by
James W. MacDonald
59k • written 5.8 years ago by
tarek.mohamed
▴ 10
11 results • Page
1 of 1
Recent ...
Replies
Comment: broken chain import in liftOver
by
Marcel Ramos
570
You could also try using one of the chain files in `AnnotationHub`, which gets auto-cached: ```r library(AnnotationHub) query(ah <- Annot…
Answer: paired analysis : return data matrix with indvidual/subject effects eliminated.
by
James W. MacDonald
59k
See `removeBatchEffect` in the `limma` package.
Comment: GDCdownload Directory Problem :(
by
Marcel Ramos
570
FWIW, `TCGAutils` is not a related package.
Comment: help please!
by
1051444231
• 0
I have updated Rtools
Comment: help please!
by
1051444231
• 0
> BiocManager::install("AnnotationDbi",force = TRUE) 'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' …
Votes
Answer: broken chain import in liftOver
Answer: toGRanges help!
Answer: toGRanges help!
Comment: CPM after RUVseq
A: Using the plotting functions of clusterProfiler / enrichplot with enrichment res
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