Bioconductor RMarkdown

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rmarkdown suppressWarning warning

updated 7 months ago by Mike Smith ★ 6.1k • written 21 months ago by Wolfgang Huber 13k

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ReportingTools RNA-Seq RMarkdown

updated 3.0 years ago by James W. MacDonald 63k • written 3.0 years ago by anthony.nash ▴ 20

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BiocWorkflowTools rmarkdown

3.3 years ago helucro ▴ 70

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BrowseSeqs DECIPHER notebook rmarkdown

updated 4.0 years ago by Erik Wright ▴ 150 • written 4.0 years ago by lauren.fitch • 0

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rmarkdown knitr

updated 4.6 years ago by Aaron Lun ★ 28k • written 4.6 years ago by Keith Hughitt ▴ 180

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package development bioconductor rstudio rmarkdown vignettes

5.8 years ago clarisbaby • 0

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BiocStyle vignettes rmarkdown latex News

6.1 years ago Andrzej Oleś ▴ 750

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biocstyle Rmarkdown Tutorial

6.2 years ago Wolfgang Huber 13k

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BiocWorkflowTools rmarkdown

updated 6.3 years ago by Andrzej Oleś ▴ 750 • written 6.3 years ago by Leonardo Collado Torres ★ 1.0k

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rmarkdown rstudio knitr

6.9 years ago Jon Bråte ▴ 250

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rmarkdown package updates

updated 7.1 years ago by James W. MacDonald 63k • written 7.1 years ago by tarek.mohamed ▴ 10

11 results • Page 1 of 1

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Answer: ukb Chromosomal position information was converted into SNPS by James W. MacDonald 63k

In my work, we almost always convert RSIDs to chr:pos because the former is ambiguous and changing whereas the latter is not. Which is like…

Comment: T.fit function of maSigPro returns error message by hanna.g • 0

Addition to the issue above: the T.fit function works only when choosing the step.method = "forward", for whatever reason. Maybe this clue …

Answer: Deseq2, enrichGO and ensembl ID by James W. MacDonald 63k

1. There isn't a keytype alternative. You need the gene IDs. 2. Convert the `rownames` of your 'se' object, or the `rownames` of your `D…

Comment: Doubts regarding Pathview by loyedbend2811 • 0

I thoroughly enjoyed reading your essay, and it was quite beneficial to me. Please join me in [monopoly online][1] if you have the time. …

Comment: ukb Chromosomal position information was converted into SNPS by wenbo • 0

Hi, I downloaded uk biobank data, but I don't know how to use R to convert chromosome position information to rs

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Answer: MDS plot edgeR

A: legend with gradient in ComplexHeatmap

Comment: comparing contrasts in edger/lima using makeContrasts function

Answer: comparing contrasts in edger/lima using makeContrasts function

Answer: Differential expression analysis with only FPKM matrix available from total newb

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