Showing : SGSeq • reset
10
votes
11
replies
2.9k
views
SGSeq: moving toward diffex from SGSeq analysis
sgseq rnaseq
updated 15 months ago by • 0 • written 8.0 years ago by ▴ 80
0
votes
0
replies
453
views
how to do Differential splicing from SGSeq analysis
DEXSeq SGSeq
16 months ago Sara • 0
1
vote
1
reply
603
views
The issue with SGSeq_analyzeFeatures() returns errors on BAM files
SGSeq
updated 16 months ago by • 0 • written 17 months ago by • 0
1
vote
0
replies
685
views
Could SGSeq utilizes "ts" tag produced from minimap2 other than "XS" tag?
XS-tag SplicedAlignment SGSeq minimap2
18 months ago jk ▴ 10
0
votes
0
replies
565
views
SGSeq how export PSI values for each typr of splice variant
SGSeq
22 months ago Alison • 0
2
votes
5
replies
1.8k
views
How should I handle read counts derived from SGSeq when they were passed to limma/edgeR
SGSeq limma edgeR
updated 12 months ago by • 0 • written 4.9 years ago by ▴ 10
6
votes
8
replies
3.9k
views
Issues with SGSeq: analyzeFeatures() returns errors on BAM files
sgseq
updated 5.7 years ago by ▴ 10 • written 9.1 years ago by ▴ 80
2
votes
1
reply
1.2k
views
Extract sample information from own BAM files using SGSeq
SGSeq
updated 5.8 years ago by ▴ 260 • written 5.8 years ago by ▴ 10
4
votes
4
replies
1.4k
views
Custom gene annotations for SGSeq
sgseq alternative splicing rna seq
updated 13 months ago by • 0 • written 5.8 years ago by • 0
0
votes
2
replies
1.3k
views
using only uniquely-mapping reads for alternative splicing using SGSeq
rna seq SGSeq Alternative splicing
updated 5.9 years ago by ▴ 260 • written 5.9 years ago by • 0
0
votes
0
replies
1.1k
views
How to run my own data using SGSeq?
annotation sgseq
updated 6.6 years ago by 4.2k • written 6.6 years ago by • 0
0
votes
6
replies
2.0k
views
Which sequencing parameters are required for SGSeq analysis of splice events?
rna-seq alternative splicing SGSeq
6.8 years ago andrea.bast • 0
0
votes
1
reply
1.3k
views
SGFeatureCounts function in SGSeq package failed to generate splice graphs
sgseq
updated 7.9 years ago by ▴ 260 • written 7.9 years ago by • 0
2
votes
1
reply
2.0k
views
SGSeq error on getBamInfo
SGSeq getBamInfo RNASeq
updated 7.9 years ago by ▴ 260 • written 7.9 years ago by ▴ 40
4
votes
5
replies
2.1k
views
R session crash with SGSeq::convertToTxFeatures
crash SGSeq TxDb makeTxDbFromBiomart TxFeatures
updated 7.9 years ago by ▴ 260 • written 8.0 years ago by ▴ 40
3
votes
3
replies
1.9k
views
question about subsetting SGSeq results by different categories of splice events
sgseq
updated 8.2 years ago by ▴ 260 • written 8.2 years ago by ▴ 10
1
vote
5
replies
2.0k
views
Error when running getSGFeatureCounts
SGSeq software error
updated 8.6 years ago by ▴ 260 • written 8.6 years ago by ▴ 10
0
votes
15
replies
3.0k
views
Issues with SGSeq: analyzeVariants method returns an error...
sgseq analyzevariants
updated 8.8 years ago by ▴ 260 • written 8.9 years ago by ▴ 80
1
vote
15
replies
4.3k
views
Issues with SGSeq: plotFeatures method returns NULL
sgseq
updated 8.9 years ago by ▴ 260 • written 9.1 years ago by ▴ 80
5
votes
16
replies
3.5k
views
Read counts generated by SGSeq are always 0
sgseq splicing alternative splicing
updated 9.5 years ago by ▴ 260 • written 9.5 years ago by ▴ 20
2
votes
2
replies
1.9k
views
SGSeq: class of "sample_info" argument of analyzeFeatures, data.frame or DataFrame!
sgseq
updated 9.5 years ago by ▴ 260 • written 9.5 years ago by ▴ 40
1
vote
6
replies
2.4k
views
Error when predicting features with SGSeq
SGSeq
updated 10.1 years ago by ▴ 90 • written 10.1 years ago by ▴ 150
1
vote
6
replies
2.8k
views
SGSeq error on analyzeFeatures
SGSeq analyzeFeatures Splicing
10.7 years ago Paolo Guarnieri ▴ 20
23 results • Page 1 of 1
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Comment: WGCNA analysis on RNAseq and proteoimcs data by sum31278 • 0
Hi sagigordon, Can you share how you performed WGCNA analysis for proteomics data? Thanks
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I once faced a dilemma similar to this when coordinating a smaller local event; despite initial hesitation, I learned invaluable skills and…
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It's also worth pointing out that the syntax for `camera` and `mroast` is the same, so I wonder how OP did the earlier `camera` analysis.
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You are specifying that the last column of your design should be used as the contrast. You should instead use `contrast[,1]`, which will us…
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Yes. You can infer that by figuring out what each coefficient measures. Here is your design matrix: ``` > targets ID Name phase G…
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Answer: ROAST compare results with complex design
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
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