Showing : SNPRelate • reset
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Database for exploring annotations of the coding genome at variants, such as candidate regulatory SNPs at disease-associated loci.
SNP ExomeSeqData snapcount SNAData SNPRelate
3.2 years ago m610110001 • 0
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2
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1.6k
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How to project a new vector onto PCA space using snpgdsPCA( )?
SNPRelate
updated 3.8 years ago by ▴ 890 • written 3.8 years ago by • 0
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1.9k
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SNP annotation
SNPRelate SNP GWASTools Annotation GWASdata
updated 4.0 years ago by ▴ 890 • written 4.1 years ago by • 0
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1.4k
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SNPRelate handling of missing genotypes
SNPRelate
4.0 years ago serpalma.v ▴ 60
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#SeqSQC error: Problem while converting vcf format to gds format
SNPRelate gdsfmt SeqSQC
4.2 years ago Bhargavi • 0
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1
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1.5k
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error when running snpgdsLDpruning: The GDS node "genotype/data" does not exist.
SNPRelate
updated 5.1 years ago by • 0 • written 5.1 years ago by • 0
3
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1
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1.6k
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How to add colors to the PCA made using SNPRelate
snprelate
updated 5.3 years ago by 68k • written 5.3 years ago by • 0
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1
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1.2k
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What does SNPRelate::snpgdsDiss calculate?
SNPRelate
updated 6.6 years ago by ▴ 30 • written 6.6 years ago by • 0
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1
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1.3k
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Different order of samples in output of snpgdsSlidingWindow to calculate Fst and aggregation method
SNPRelate
updated 6.6 years ago by ▴ 30 • written 6.7 years ago by ▴ 60
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2.2k
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VCF file does not include snp.id, can I still run SNPRelate for Relatedness Analysis? Data is output from STACKS for mangroves
SNPRelate VCF
updated 6.8 years ago by ▴ 890 • written 6.8 years ago by • 0
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1.4k
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PCA axis description SNPRelate
SNPRelate PCA
updated 6.8 years ago by ▴ 890 • written 6.8 years ago by ▴ 60
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1
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4.8k
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SNPrelate, snpgdsFst is excluding all snps on non-autosomes, how can I get it to stop doing that?
snprelate fst
updated 7.2 years ago by ▴ 30 • written 7.2 years ago by • 0
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1.3k
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Using previously calculated PCs in GENESIS
genesis snprelate
7.3 years ago Stephanie M. Gogarten ▴ 890
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1.8k
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Write gds in parallel
gds SNPRelate BiocParallel
updated 7.7 years ago by ▴ 30 • written 7.7 years ago by ▴ 40
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2
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2.2k
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Error converting vcf to gds
snprelate vcf gds
updated 7.8 years ago by ▴ 30 • written 7.8 years ago by • 0
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2
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2.3k
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Cannot read plink files correctly
snprelate Tutorial
updated 8.6 years ago by ▴ 30 • written 8.6 years ago by • 0
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1
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2.0k
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SNPRelate Dendrogram Point Colors and Shapes
SNPRelate R
updated 9.6 years ago by ▴ 30 • written 9.6 years ago by • 0
3
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2
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2.3k
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Minimum allele frequency (MAF) from a Genomic Data Structure (GDS) file
snprelate GWASTools
updated 9.6 years ago by ▴ 30 • written 9.6 years ago by ▴ 40
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9
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7.5k
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unable to update mgcv package
mgcv snprelate
updated 10.0 years ago by 25k • written 10.0 years ago by • 0
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4
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3.1k
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NA values in snpgdsDiss dissimilarity matrix
snprelate
updated 10.1 years ago by ▴ 30 • written 10.1 years ago by ▴ 10
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1.2k
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RADseq chromosomes unknown
snprelate RADseq Stacks
10.1 years ago clive.darwell • 0
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2.2k
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GWASTools
Organism GWASTools Organism GWASTools SNPRelate
12.8 years ago Stephanie M. Gogarten ▴ 890
22 results • Page 1 of 1
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Comment: Ensembl plants at annotationHub? by Guido Hooiveld ★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0
Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…
Comment: Ensembl plants at annotationHub? by jwp48 • 0
Dear Johannes, Would it be possible to generate a EnsDb for the newest Medicago V5 genome release? Medicago truncatula A17 r5.0 This woul…
Answer: please provide a BibTeX citation for "Advanced Single-Cell Analysis with Biocond by Ludwig Geistlinger ▴ 80
When referring to the OSCA book including individual sub-books please cite the OSCA paper: Amezquita, R.A., Lun, A.T.L., Becht, E. et a…
Comment: please provide a BibTeX citation for "Advanced Single-Cell Analysis with Biocond by Sean Davis 21k
Just FYI, I added a github issue to track: https://github.com/OSCA-source/OSCA.advanced/issues/27
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A: how to control age and gender effect in expression data using DESeq2
limma moderated t-statistics and B-statistics
A: how to control age and gender effect in expression data using DESeq2
how to control age and gender effect in expression data using DESeq2
Answer: please provide a BibTeX citation for "Advanced Single-Cell Analysis with Biocond
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