Showing : SNPRelate • reset
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Database for exploring annotations of the coding genome at variants, such as candidate regulatory SNPs at disease-associated loci.
SNP ExomeSeqData snapcount SNAData SNPRelate
3.1 years ago m610110001 • 0
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2
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1.5k
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How to project a new vector onto PCA space using snpgdsPCA( )?
SNPRelate
updated 3.7 years ago by ▴ 890 • written 3.7 years ago by • 0
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1.9k
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SNP annotation
SNPRelate SNP GWASTools Annotation GWASdata
updated 3.8 years ago by ▴ 890 • written 4.0 years ago by • 0
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1.4k
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SNPRelate handling of missing genotypes
SNPRelate
3.8 years ago serpalma.v ▴ 60
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#SeqSQC error: Problem while converting vcf format to gds format
SNPRelate gdsfmt SeqSQC
4.1 years ago Bhargavi • 0
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1
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1.4k
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error when running snpgdsLDpruning: The GDS node "genotype/data" does not exist.
SNPRelate
updated 4.9 years ago by • 0 • written 4.9 years ago by • 0
3
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1
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1.5k
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How to add colors to the PCA made using SNPRelate
snprelate
updated 5.2 years ago by 68k • written 5.2 years ago by • 0
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1
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1.2k
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What does SNPRelate::snpgdsDiss calculate?
SNPRelate
updated 6.4 years ago by ▴ 30 • written 6.4 years ago by • 0
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1
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1.3k
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Different order of samples in output of snpgdsSlidingWindow to calculate Fst and aggregation method
SNPRelate
updated 6.5 years ago by ▴ 30 • written 6.5 years ago by ▴ 60
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1
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2.1k
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VCF file does not include snp.id, can I still run SNPRelate for Relatedness Analysis? Data is output from STACKS for mangroves
SNPRelate VCF
updated 6.6 years ago by ▴ 890 • written 6.6 years ago by • 0
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1
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1.4k
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PCA axis description SNPRelate
SNPRelate PCA
updated 6.7 years ago by ▴ 890 • written 6.7 years ago by ▴ 60
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1
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4.7k
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SNPrelate, snpgdsFst is excluding all snps on non-autosomes, how can I get it to stop doing that?
snprelate fst
updated 7.1 years ago by ▴ 30 • written 7.1 years ago by • 0
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1.3k
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Using previously calculated PCs in GENESIS
genesis snprelate
7.2 years ago Stephanie M. Gogarten ▴ 890
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1
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1.8k
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Write gds in parallel
gds SNPRelate BiocParallel
updated 7.6 years ago by ▴ 30 • written 7.6 years ago by ▴ 40
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2
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2.1k
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Error converting vcf to gds
snprelate vcf gds
updated 7.6 years ago by ▴ 30 • written 7.7 years ago by • 0
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2
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2.2k
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Cannot read plink files correctly
snprelate Tutorial
updated 8.5 years ago by ▴ 30 • written 8.5 years ago by • 0
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1
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2.0k
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SNPRelate Dendrogram Point Colors and Shapes
SNPRelate R
updated 9.4 years ago by ▴ 30 • written 9.4 years ago by • 0
3
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2
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2.3k
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Minimum allele frequency (MAF) from a Genomic Data Structure (GDS) file
snprelate GWASTools
updated 9.5 years ago by ▴ 30 • written 9.5 years ago by ▴ 40
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9
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7.4k
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unable to update mgcv package
mgcv snprelate
updated 9.9 years ago by 25k • written 9.9 years ago by • 0
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4
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3.0k
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NA values in snpgdsDiss dissimilarity matrix
snprelate
updated 10.0 years ago by ▴ 30 • written 10.0 years ago by ▴ 10
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1.2k
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RADseq chromosomes unknown
snprelate RADseq Stacks
10.0 years ago clive.darwell • 0
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2.2k
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GWASTools
Organism GWASTools Organism GWASTools SNPRelate
12.7 years ago Stephanie M. Gogarten ▴ 890
22 results • Page 1 of 1
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Comment: Bioconductor 3.22 Release Schedule by loganlstevens • 0
This release reminds me of the strategies in [solitaired](https://solitaired.io) to overcome live solitaires.
Answer: Create consensusMatrix for codon bases by Kevin Blighe ★ 4.0k
To address your query on generating a codon frequency matrix analogous to the output from `consensusMatrix` for a `DNAStringSet` object, no…
Answer: Finding duplicated entries in GRangesList by Kevin Blighe ★ 4.0k
The duplicated and unique functions operate element-wise on GRangesList objects. This means that they apply the respective function to each…
Answer: sigDF object in sesame by Kevin Blighe ★ 4.0k
Your interpretation of the column headers in the SigDF object is correct: MG corresponds to the methylated signal intensity in the green ch…
Answer: DESeq2 on non-RNASeq counts data by Kevin Blighe ★ 4.0k
The use of DESeq2 for count data from artificial sequences is acceptable, as the program models counts via a negative binomial distribution…
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Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
Answer: Identifying differentially expressed genes in individual samples from a large co
Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction
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