Showing : SNPs • reset
1
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2
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3.0k
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Any tool to calculate Fst on haploid data?
snps VCF
updated 2.6 years ago by • 0 • written 7.8 years ago by ▴ 10
0
votes
1
reply
751
views
Error running hierClust
hierClust R SNPs clustering
updated 2.7 years ago by 67k • written 2.7 years ago by • 0
0
votes
0
replies
1.1k
views
How to extract genomic positions of SNPs using snp-sites or using any R package?
SNPs
5.8 years ago pltbiotech_tkarthi • 0
0
votes
0
replies
1.4k
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vcf to venn diagram
snps vcf venn diagram ggplot2
6.0 years ago mictadlo ▴ 10
0
votes
6
replies
1.4k
views
Physical position to gene positions
bioconductor molecular biology snps
updated 6.1 years ago by 67k • written 6.1 years ago by • 0
2
votes
5
replies
2.9k
views
Error with R package motifbreakR while trying to read a vcf file with snps.from.file function
motifbreakR vcf snps motif analysis
updated 6.5 years ago by ★ 6.8k • written 6.5 years ago by ▴ 840
3
votes
4
replies
1.6k
views
No annotation for single SNPs
variantannotation SNPs txdb.hsapiens.ucsc.hg19.knowngene ucsc
updated 7.5 years ago by ★ 6.8k • written 7.5 years ago by • 0
0
votes
1
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1.6k
views
Extract SNPs and INDELs
hsapiens snps indels
updated 9.1 years ago by 16k • written 9.1 years ago by • 0
0
votes
1
reply
1.7k
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Counting SNPs where ambiguity codes represent heterozygosity.
Biostrings SNPs alignment
updated 9.4 years ago by 16k • written 9.4 years ago by ▴ 30
0
votes
4
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2.0k
views
Marking and annotating several SNPs on Ideogram track by Gviz package.
gviz ideogram snps
updated 9.9 years ago by ★ 1.6k • written 9.9 years ago by • 0
4
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3
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2.4k
views
Overlap the snps
overlap snps granges iranges
updated 10.2 years ago by ★ 11k • written 10.2 years ago by ▴ 10
11 results • Page 1 of 1
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Replies
Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts by O'Brien • 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
Comment: Packages don't update, but no error or warning is thrown by neighsanlo • 0
This is useful information.
Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by freemanmclaughlin9969289 • 0
Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…
Comment: How to get around the warning message: mzR has been built against a different Rc by Nan • 0
Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…
Votes
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
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