Bioconductor SNPs

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3.5k

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snps VCF

updated 3.5 years ago by Arafat • 0 • written 8.7 years ago by rkdonthu ▴ 10

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912

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hierClust R SNPs clustering

updated 3.6 years ago by James W. MacDonald 68k • written 3.6 years ago by sekhwal • 0

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1.3k

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SNPs

6.6 years ago pltbiotech_tkarthi • 0

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1.6k

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snps vcf venn diagram ggplot2

6.8 years ago mictadlo ▴ 10

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1.6k

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bioconductor molecular biology snps

updated 6.9 years ago by James W. MacDonald 68k • written 6.9 years ago by jebreen20 • 0

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3.2k

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motifbreakR vcf snps motif analysis

updated 7.3 years ago by Valerie Obenchain ★ 6.8k • written 7.3 years ago by svlachavas ▴ 840

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1.9k

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variantannotation SNPs txdb.hsapiens.ucsc.hg19.knowngene ucsc

updated 8.3 years ago by Valerie Obenchain ★ 6.8k • written 8.3 years ago by Lna • 0

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1.8k

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hsapiens snps indels

updated 9.9 years ago by Hervé Pagès 16k • written 9.9 years ago by kredens • 0

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2.0k

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Biostrings SNPs alignment

updated 10.3 years ago by Hervé Pagès 16k • written 10.3 years ago by ben.ward ▴ 30

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2.3k

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gviz ideogram snps

updated 10.7 years ago by florian.hahne@novartis.com ★ 1.6k • written 10.7 years ago by vnyirongo • 0

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2.7k

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overlap snps granges iranges

updated 11.0 years ago by Michael Lawrence ★ 11k • written 11.0 years ago by anastasiya-terskih ▴ 10

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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…

Comment: Join BOC Sciences at Drug Discovery Chemistry by teamardigen • 0

Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0

I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…

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DESeq2 for candidate gene analysis

Join BOC Sciences at Drug Discovery Chemistry

Drug datasets for RNA-seq

Comment: Check removeBatchEffect effectiveness

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?

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