Bioconductor SNPs

Showing : SNPs • reset

vote

replies

3.4k

views

snps VCF

updated 3.3 years ago by Arafat • 0 • written 8.5 years ago by rkdonthu ▴ 10

votes

884

views

hierClust R SNPs clustering

updated 3.4 years ago by James W. MacDonald 68k • written 3.4 years ago by sekhwal • 0

votes

replies

1.3k

views

SNPs

6.4 years ago pltbiotech_tkarthi • 0

votes

replies

1.6k

views

snps vcf venn diagram ggplot2

6.7 years ago mictadlo ▴ 10

votes

replies

1.6k

views

bioconductor molecular biology snps

updated 6.8 years ago by James W. MacDonald 68k • written 6.8 years ago by jebreen20 • 0

votes

replies

3.2k

views

motifbreakR vcf snps motif analysis

updated 7.2 years ago by Valerie Obenchain ★ 6.8k • written 7.2 years ago by svlachavas ▴ 840

votes

replies

1.9k

views

variantannotation SNPs txdb.hsapiens.ucsc.hg19.knowngene ucsc

updated 8.2 years ago by Valerie Obenchain ★ 6.8k • written 8.2 years ago by Lna • 0

votes

1.7k

views

hsapiens snps indels

updated 9.8 years ago by Hervé Pagès 16k • written 9.8 years ago by kredens • 0

votes

2.0k

views

Biostrings SNPs alignment

updated 10.1 years ago by Hervé Pagès 16k • written 10.1 years ago by ben.ward ▴ 30

votes

replies

2.3k

views

gviz ideogram snps

updated 10.6 years ago by florian.hahne@novartis.com ★ 1.6k • written 10.6 years ago by vnyirongo • 0

votes

replies

2.6k

views

overlap snps granges iranges

updated 10.9 years ago by Michael Lawrence ★ 11k • written 10.9 years ago by anastasiya-terskih ▴ 10

11 results • Page 1 of 1

Recent ...

Replies

Comment: Biological Pathway Database by peterparkerrbu • 0

Having the pathways available in PowerPoint format is a huge plus, as it makes them easy to use for presentations and teaching. The ability…

Comment: WGCNA analysis on RNAseq and proteoimcs data by sum31278 • 0

Hi sagigordon, Can you share how you performed WGCNA analysis for proteomics data? Thanks

Comment: European Bioconductor Conference 2023 planning by inadequate.peacock.iiag • 0

I once faced a dilemma similar to this when coordinating a smaller local event; despite initial hesitation, I learned invaluable skills and…

Comment: ROAST compare results with complex design by Gordon Smyth 52k

It's also worth pointing out that the syntax for `camera` and `mroast` is the same, so I wonder how OP did the earlier `camera` analysis.

Answer: ROAST compare results with complex design by James W. MacDonald 68k

You are specifying that the last column of your design should be used as the contrast. You should instead use `contrast[,1]`, which will us…

Votes

Answer: ROAST compare results with complex design

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi

Awards • All