Showing : SNPs • reset
1
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2
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3.5k
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Any tool to calculate Fst on haploid data?
snps VCF
updated 3.5 years ago by • 0 • written 8.7 years ago by ▴ 10
0
votes
1
reply
929
views
Error running hierClust
hierClust R SNPs clustering
updated 3.6 years ago by 68k • written 3.6 years ago by • 0
0
votes
0
replies
1.4k
views
How to extract genomic positions of SNPs using snp-sites or using any R package?
SNPs
6.6 years ago pltbiotech_tkarthi • 0
0
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0
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1.6k
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vcf to venn diagram
snps vcf venn diagram ggplot2
6.9 years ago mictadlo ▴ 10
0
votes
6
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1.7k
views
Physical position to gene positions
bioconductor molecular biology snps
updated 7.0 years ago by 68k • written 7.0 years ago by • 0
2
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5
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3.3k
views
Error with R package motifbreakR while trying to read a vcf file with snps.from.file function
motifbreakR vcf snps motif analysis
updated 7.4 years ago by ★ 6.8k • written 7.4 years ago by ▴ 840
3
votes
4
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2.0k
views
No annotation for single SNPs
variantannotation SNPs txdb.hsapiens.ucsc.hg19.knowngene ucsc
updated 8.4 years ago by ★ 6.8k • written 8.4 years ago by • 0
0
votes
1
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1.8k
views
Extract SNPs and INDELs
hsapiens snps indels
updated 10.0 years ago by 16k • written 10.0 years ago by • 0
0
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1
reply
2.0k
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Counting SNPs where ambiguity codes represent heterozygosity.
Biostrings SNPs alignment
updated 10.3 years ago by 16k • written 10.3 years ago by ▴ 30
0
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4
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2.3k
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Marking and annotating several SNPs on Ideogram track by Gviz package.
gviz ideogram snps
updated 10.8 years ago by ★ 1.6k • written 10.8 years ago by • 0
4
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3
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2.7k
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Overlap the snps
overlap snps granges iranges
updated 11.1 years ago by ★ 11k • written 11.1 years ago by ▴ 10
11 results • Page 1 of 1
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Comment: Co-occurrence Network Analysis between Algae and Bacteria by Stefano Mangiola ▴ 40
Just a placeholder, that we are extending `sccomp` to co-occurrence analyses. Yours could be a good use-case to test first. We will be in t…
Answer: DESeq2 design for haplotype MPRA by aimesd808 • 0
I appreciate you telling me about this. Now it's crystal plain to me. Publish this: https://support.bioconductor.org/p/9162649/
Answer: Must I do pseudobulk analysis on Cell Surface Protein Labeling data of Single C by Kevin Blighe ★ 4.0k
Hello Lei, The concept of pseudobulk analysis applies equally to cell surface protein data as it does to gene expression data in single-…
Answer: Corrupted SQLite while trying to install PANTHER.db? by Kevin Blighe ★ 4.0k
My sincere apologies that my colleagues had ignored your question. The error message indicates that the SQLite database within the PANTH…
Answer: Corrupted SQLite while trying to install PANTHER.db? by Kevin Blighe ★ 4.0k
My sincere apologies that my colleagues had ignored your question. Hello Alan. The error message "database disk image is malformed" i…
Votes
Answer: Identifying differentially expressed genes in individual samples from a large co
Answer: Identifying differentially expressed genes in individual samples from a large co
Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction
Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Comment: Error installing Seqinfo
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