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SNPs
•
reset
1
vote
2
replies
3.1k
views
Any tool to calculate Fst on haploid data?
snps
VCF
updated 2.7 years ago by
Arafat
• 0 • written 8.0 years ago by
rkdonthu
▴ 10
0
votes
1
reply
771
views
Error running hierClust
hierClust
R
SNPs
clustering
updated 2.9 years ago by
James W. MacDonald
67k • written 2.9 years ago by
sekhwal
• 0
0
votes
0
replies
1.2k
views
How to extract genomic positions of SNPs using snp-sites or using any R package?
SNPs
5.9 years ago
pltbiotech_tkarthi
• 0
0
votes
0
replies
1.4k
views
vcf to venn diagram
snps
vcf
venn diagram
ggplot2
6.1 years ago
mictadlo
▴ 10
0
votes
6
replies
1.5k
views
Physical position to gene positions
bioconductor
molecular biology
snps
updated 6.2 years ago by
James W. MacDonald
67k • written 6.2 years ago by
jebreen20
• 0
2
votes
5
replies
2.9k
views
Error with R package motifbreakR while trying to read a vcf file with snps.from.file function
motifbreakR
vcf
snps
motif analysis
updated 6.6 years ago by
Valerie Obenchain
★ 6.8k • written 6.6 years ago by
svlachavas
▴ 840
3
votes
4
replies
1.7k
views
No annotation for single SNPs
variantannotation
SNPs
txdb.hsapiens.ucsc.hg19.knowngene
ucsc
updated 7.6 years ago by
Valerie Obenchain
★ 6.8k • written 7.6 years ago by
Lna
• 0
0
votes
1
reply
1.6k
views
Extract SNPs and INDELs
hsapiens
snps
indels
updated 9.2 years ago by
Hervé Pagès
16k • written 9.2 years ago by
kredens
• 0
0
votes
1
reply
1.8k
views
Counting SNPs where ambiguity codes represent heterozygosity.
Biostrings
SNPs
alignment
updated 9.5 years ago by
Hervé Pagès
16k • written 9.6 years ago by
ben.ward
▴ 30
0
votes
4
replies
2.1k
views
Marking and annotating several SNPs on Ideogram track by Gviz package.
gviz
ideogram
snps
updated 10.0 years ago by
florian.hahne@novartis.com
★ 1.6k • written 10.0 years ago by
vnyirongo
• 0
4
votes
3
replies
2.5k
views
Overlap the snps
overlap
snps
granges
iranges
updated 10.3 years ago by
Michael Lawrence
★ 11k • written 10.3 years ago by
anastasiya-terskih
▴ 10
11 results • Page
1 of 1
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Replies
Answer: Meffil: error in functional normalization function (Error in rg.to.mu(rg, probes
by
James W. MacDonald
67k
This support site is meant to provide support for Bioconductor packages, but `Meffil` is not part of Bioconductor. You could presumably con…
Comment: Unused arguments error without used arguments in GSVA?
by
Axel Klenk
★ 1.1k
> It looks like the ssgseaParam function might not be passing the > correct parameters to GSVA::gsva() Apparently because of the extra com…
Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
by
franknappi14
• 0
I tried it and it's working properly.
Answer: accounting for vs. removing batch effects with DESeq2 in RNAseq analysis
by
ATpoint
★ 4.6k
The vignette covers batch effects as per the authors best practice, please read it and consider following it.
Comment: DESeq2 analysis with transcript counts
by
kahunroleh
• 0
Thanks for sharing the solution. I also face this problem. [nulls][1] [1]: https://nulls-brawl-apk.fr/
Votes
Answer: Reducing and aggregating GRanges with gaps using plyranges
Answer: Find exact GRanges match keeping metadata columns
Answer: Find exact GRanges match keeping metadata columns
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
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