Bioconductor SNPs

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3.6k

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snps VCF

updated 3.8 years ago by Arafat • 0 • written 9.0 years ago by rkdonthu ▴ 10

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967

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hierClust R SNPs clustering

updated 3.9 years ago by James W. MacDonald 68k • written 3.9 years ago by sekhwal • 0

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1.7k

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SNPs

6.9 years ago pltbiotech_tkarthi • 0

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1.7k

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snps vcf venn diagram ggplot2

7.1 years ago mictadlo ▴ 10

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1.8k

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bioconductor molecular biology snps

updated 7.2 years ago by James W. MacDonald 68k • written 7.2 years ago by jebreen20 • 0

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3.4k

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motifbreakR vcf snps motif analysis

updated 7.7 years ago by Valerie Obenchain ★ 6.8k • written 7.7 years ago by svlachavas ▴ 840

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2.1k

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variantannotation SNPs txdb.hsapiens.ucsc.hg19.knowngene ucsc

updated 8.7 years ago by Valerie Obenchain ★ 6.8k • written 8.7 years ago by Lna • 0

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1.8k

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hsapiens snps indels

updated 10.2 years ago by Hervé Pagès 16k • written 10.2 years ago by kredens • 0

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2.2k

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Biostrings SNPs alignment

updated 10.6 years ago by Hervé Pagès 16k • written 10.6 years ago by ben.ward ▴ 30

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2.5k

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gviz ideogram snps

updated 11.1 years ago by florian.hahne@novartis.com ★ 1.6k • written 11.1 years ago by vnyirongo • 0

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2.8k

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overlap snps granges iranges

updated 11.4 years ago by Michael Lawrence ★ 11k • written 11.4 years ago by anastasiya-terskih ▴ 10

11 results • Page 1 of 1

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Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k

I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…

Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k

Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0

Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…

Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0

Hello, I was also wondering about the same issue. Did you figure it out?

Comment: [DESeq2] Changing dispersion estimates between runs of DESeq2 by colinmccornack • 0

FWIW: This seems to be due to architectural differences between two compute nodes I was running on, specifically with the DESeq2:::fitNbino…

Votes

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

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Popular Question to Peter Hickey ▴ 760