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SNPs
•
reset
1
vote
2
replies
3.5k
views
Any tool to calculate Fst on haploid data?
snps
VCF
updated 3.5 years ago by
Arafat
• 0 • written 8.7 years ago by
rkdonthu
▴ 10
0
votes
1
reply
912
views
Error running hierClust
hierClust
R
SNPs
clustering
updated 3.6 years ago by
James W. MacDonald
68k • written 3.6 years ago by
sekhwal
• 0
0
votes
0
replies
1.3k
views
How to extract genomic positions of SNPs using snp-sites or using any R package?
SNPs
6.6 years ago
pltbiotech_tkarthi
• 0
0
votes
0
replies
1.6k
views
vcf to venn diagram
snps
vcf
venn diagram
ggplot2
6.8 years ago
mictadlo
▴ 10
0
votes
6
replies
1.6k
views
Physical position to gene positions
bioconductor
molecular biology
snps
updated 6.9 years ago by
James W. MacDonald
68k • written 6.9 years ago by
jebreen20
• 0
2
votes
5
replies
3.2k
views
Error with R package motifbreakR while trying to read a vcf file with snps.from.file function
motifbreakR
vcf
snps
motif analysis
updated 7.3 years ago by
Valerie Obenchain
★ 6.8k • written 7.3 years ago by
svlachavas
▴ 840
3
votes
4
replies
1.9k
views
No annotation for single SNPs
variantannotation
SNPs
txdb.hsapiens.ucsc.hg19.knowngene
ucsc
updated 8.3 years ago by
Valerie Obenchain
★ 6.8k • written 8.3 years ago by
Lna
• 0
0
votes
1
reply
1.8k
views
Extract SNPs and INDELs
hsapiens
snps
indels
updated 9.9 years ago by
Hervé Pagès
16k • written 9.9 years ago by
kredens
• 0
0
votes
1
reply
2.0k
views
Counting SNPs where ambiguity codes represent heterozygosity.
Biostrings
SNPs
alignment
updated 10.3 years ago by
Hervé Pagès
16k • written 10.3 years ago by
ben.ward
▴ 30
0
votes
4
replies
2.3k
views
Marking and annotating several SNPs on Ideogram track by Gviz package.
gviz
ideogram
snps
updated 10.7 years ago by
florian.hahne@novartis.com
★ 1.6k • written 10.7 years ago by
vnyirongo
• 0
4
votes
3
replies
2.7k
views
Overlap the snps
overlap
snps
granges
iranges
updated 11.0 years ago by
Michael Lawrence
★ 11k • written 11.0 years ago by
anastasiya-terskih
▴ 10
11 results • Page
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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…
Comment: Join BOC Sciences at Drug Discovery Chemistry
by
teamardigen
• 0
Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
dan.gatti
• 0
I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…
Votes
DESeq2 for candidate gene analysis
Join BOC Sciences at Drug Discovery Chemistry
Drug datasets for RNA-seq
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
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