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SNPs
•
reset
1
vote
2
replies
2.6k
views
Any tool to calculate Fst on haploid data?
snps
VCF
updated 2.0 years ago by
Arafat
• 0 • written 7.2 years ago by
rkdonthu
▴ 10
0
votes
1
reply
607
views
Error running hierClust
hierClust
R
SNPs
clustering
updated 2.1 years ago by
James W. MacDonald
65k • written 2.1 years ago by
sekhwal
• 0
0
votes
0
replies
839
views
How to extract genomic positions of SNPs using snp-sites or using any R package?
SNPs
5.1 years ago
pltbiotech_tkarthi
• 0
0
votes
0
replies
1.2k
views
vcf to venn diagram
snps
vcf
venn diagram
ggplot2
5.4 years ago
mictadlo
▴ 10
0
votes
6
replies
1.2k
views
Physical position to gene positions
bioconductor
molecular biology
snps
updated 5.4 years ago by
James W. MacDonald
65k • written 5.4 years ago by
jebreen20
• 0
2
votes
5
replies
2.5k
views
Error with R package motifbreakR while trying to read a vcf file with snps.from.file function
motifbreakR
vcf
snps
motif analysis
updated 5.9 years ago by
Valerie Obenchain
★ 6.8k • written 5.9 years ago by
svlachavas
▴ 830
3
votes
4
replies
1.4k
views
No annotation for single SNPs
variantannotation
SNPs
txdb.hsapiens.ucsc.hg19.knowngene
ucsc
updated 6.9 years ago by
Valerie Obenchain
★ 6.8k • written 6.9 years ago by
Lna
• 0
0
votes
1
reply
1.4k
views
Extract SNPs and INDELs
hsapiens
snps
indels
updated 8.4 years ago by
Hervé Pagès
16k • written 8.5 years ago by
kredens
• 0
0
votes
1
reply
1.5k
views
Counting SNPs where ambiguity codes represent heterozygosity.
Biostrings
SNPs
alignment
updated 8.8 years ago by
Hervé Pagès
16k • written 8.8 years ago by
ben.ward
▴ 30
0
votes
4
replies
1.8k
views
Marking and annotating several SNPs on Ideogram track by Gviz package.
gviz
ideogram
snps
updated 9.3 years ago by
florian.hahne@novartis.com
★ 1.6k • written 9.3 years ago by
vnyirongo
• 0
4
votes
3
replies
2.1k
views
Overlap the snps
overlap
snps
granges
iranges
updated 9.6 years ago by
Michael Lawrence
★ 11k • written 9.6 years ago by
anastasiya-terskih
▴ 10
11 results • Page
1 of 1
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Replies
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
> Any suggestions for methylation data segmentation? I think the same segmentation can be used.
Comment: deseq2 results
by
swbarnes2
★ 1.3k
Cross-posted https://www.biostars.org/p/9594331/#9594458
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Mike Smith
★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Comment: Extremely small p-values using Limma for proteomic data
by
Robert Castelo
★ 3.3k
From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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Michael Love
42k
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Haibo Liu
• 0
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to
HS
▴ 10
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DevelopingHippo
• 0
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to
Robert Castelo
★ 3.3k
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