Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
STAR
•
reset
2
votes
3
replies
1.3k
views
Using STAR's readspergene.tab.out outputs to make gene-level count matrix for DESeq2 using tximport
STAR
tximport
RNASeq
DESeq2
updated 4 months ago by
swbarnes2
★ 1.4k • written 5 months ago by
Bo
• 0
0
votes
1
reply
599
views
Help for RNA sequencing analysis with DESEQ2
DESeq2
star
differentiallyexpressed
updated 16 months ago by
Michael Love
42k • written 16 months ago by
nico
• 0
0
votes
1
reply
2.0k
views
FeatureCounts: Low assigned reads, can I proceed? Do I need to do another pre-processing step?
LowAssignedReads
STAR
featureCounts
updated 17 months ago by
swbarnes2
★ 1.4k • written 17 months ago by
lalala
• 0
1
vote
3
replies
1.6k
views
tximeta on STAR-aligned Salmon-quantified output
tximeta
salmon
STAR
updated 4.0 years ago by
Michael Love
42k • written 4.0 years ago by
josephbrown
▴ 10
0
votes
1
reply
1.8k
views
using tximport with STAR transcript-quantification output
tximport
deseq2
STAR
updated 4.6 years ago by
Michael Love
42k • written 4.6 years ago by
mohamedrefaat.1.1992
• 0
0
votes
1
reply
905
views
Using STAR and DESeq2 for circRNA analysis
STAR
deseq2
updated 5.2 years ago by
Michael Love
42k • written 5.2 years ago by
csijst
• 0
3
votes
2
replies
2.1k
views
The optimal minMQS parameter in featureCounts for RNA-Seq quantification
RNA-Seq
featureCounts
STAR
minMQS
mapping quality score
updated 5.3 years ago by
Gordon Smyth
50k • written 5.3 years ago by
Gary
▴ 20
0
votes
1
reply
919
views
weired output with featurecount
featurecounts
star
5.7 years ago
roghaiyeh.safari
• 0
0
votes
3
replies
3.3k
views
Handling pseudogenes in RNA-seq
rna-seq
pseudogenes
STAR
counts
updated 5.9 years ago by
Levi Waldron
★ 1.1k • written 5.9 years ago by
supremerulersuraj
• 0
0
votes
2
replies
3.0k
views
lncRNA annotation for featureCouns and STAR
lncRNA
featureCounts
STAR
annotation
updated 6.0 years ago by
Wei Shi
★ 3.6k • written 6.0 years ago by
inah
▴ 10
0
votes
2
replies
1.1k
views
BAM file into R from Illumina
bam file
STAR
Illumina
updated 6.1 years ago by
ta_awwad
▴ 10 • written 6.1 years ago by
soheilazareie
• 0
2
votes
2
replies
1.2k
views
Why does total unique map not equal to library size?
htseqcounts
star
rnaseq
6.7 years ago
Ahdee
▴ 50
2
votes
2
replies
7.4k
views
RNA STAR to DESeq2
deseq2
count matrix
star
updated 6.8 years ago by
James W. MacDonald
65k • written 6.8 years ago by
nikelle.petrillo
• 0
1
vote
2
replies
1.5k
views
Gviz off-by-one with STAR BAM
gviz
off-by-one
STAR
BAM
coverage
updated 7.2 years ago by
Martin Morgan
25k • written 7.2 years ago by
bernt.popp
• 0
1
vote
7
replies
5.4k
views
featureCounts creating fragments and high NoFeatures value
featurecounts
bioconductor
differential gene expression
star
updated 7.3 years ago by
Wei Shi
★ 3.6k • written 7.3 years ago by
gregory.l.stone
▴ 10
0
votes
10
replies
4.8k
views
Differential expression analysis for STAR-aligned RNA-Seq data
deseq2
rnaseq
STAR
updated 7.7 years ago by
Michael Love
42k • written 7.7 years ago by
sum31278
• 0
4
votes
7
replies
2.2k
views
RNAseq reads mapped to the gene
star
featurecounts
edgeR
RNAseq
8.0 years ago
myprogramming2016
• 0
0
votes
0
replies
1.2k
views
STAR_how many mismatches to allow if the read length is 100 bp in RNA-seq data
star
8.4 years ago
tg369
▴ 10
0
votes
5
replies
2.9k
views
Problem Importing STAR fusion data into chimera
fusion genes
chimera
star
updated 9.2 years ago by
richa_r
• 0 • written 9.5 years ago by
am26
• 0
1
vote
5
replies
2.3k
views
Single end STAR Chimeric.out.junction fails to read with chimera::importFusionData
chimera
STAR
updated 9.3 years ago by
rcaloger
▴ 500 • written 9.3 years ago by
wresch
• 0
20 results • Page
1 of 1
Recent ...
Replies
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
JKim
• 0
The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Awards
• All
Popular Question
to
Vincent J. Carey, Jr.
6.7k
Popular Question
to
Koen Van den Berge
▴ 180
Popular Question
to
shepherl
3.9k
Popular Question
to
Ken C
• 0
Popular Question
to
Johannes Rainer
★ 2.0k
Locations
• All
India,
20 minutes ago
United States,
43 minutes ago
WEHI, Melbourne, Australia,
54 minutes ago
Melbourne, Australia,
55 minutes ago
The city by the bay,
1 hour ago
Traffic: 381 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6