Showing : Survival • reset
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how to convert a AffyBatch into ExpressionSet object ?
Annotation GO Survival ExperimentData cdf DynDoc genefilter geneplotter multtest affy GO
updated 18.3 years ago by ▴ 220 • written 18.3 years ago by ★ 2.2k
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how to convert a AffyBatch into ExpressionSet object ?
Annotation GO Survival ExperimentData cdf DynDoc genefilter geneplotter multtest affy GO
18.3 years ago Min Wook Kim ▴ 20
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1.5k
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globaltest - multinomial model
Survival affy vsn limma globaltest affyio Survival affy vsn limma globaltest affyio
updated 18.3 years ago by ▴ 150 • written 18.3 years ago by ▴ 330
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Reading Agilent files using read.maimages
Survival DynDoc genefilter tkWidgets affy vsn marray convert ArrayExpress Survival affy
updated 18.3 years ago by ▴ 20 • written 18.3 years ago by ▴ 100
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4.0k
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RE : create an new AnnotatedDataFrame
Annotation Survival Yeast Biobase genefilter tkWidgets marray convert arrayMagic affyio
updated 18.3 years ago by 25k • written 18.3 years ago by ▴ 30
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2.1k
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create an new AnnotatedDataFrame
Survival Yeast Biobase genefilter tkWidgets marray convert arrayMagic affyio Survival
updated 18.3 years ago by 25k • written 18.3 years ago by ▴ 30
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Return of "I'm sorry, I do not know about chip type (foo)"
Survival cdf affydata limma gcrma matchprobes affyPLM simpleaffy Survival cdf affydata
18.4 years ago Dave Jacoby ▴ 20
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limma normalizeWithinArrays method="control"
Survival annotate genefilter limma Survival annotate genefilter limma
18.4 years ago Al Ivens ▴ 270
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1
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1.6k
views
snapCGH; export results of summarize.clones() function from aCGH
aCGH Survival Cancer Breast Biobase annotate genefilter geneplotter multtest limma aCGH
18.4 years ago Steven McKinney ▴ 310
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9
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2.5k
views
problem with duplicateCorrelation and ExpressionSet objects
GO Survival cdf Biobase graph limma gcrma annaffy affyPLM simpleaffy biomaRt Category
updated 18.5 years ago by ★ 7.4k • written 18.5 years ago by ★ 2.2k
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1
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1.2k
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simpleaffy plot error
Survival cdf genefilter simpleaffy Survival cdf genefilter simpleaffy
updated 18.5 years ago by ★ 1.1k • written 18.5 years ago by ▴ 510
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0
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856
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Bug in mt.sample.rawp (multtest), R 2.4.1,
Survival Survival
18.5 years ago shirley zhang ★ 1.0k
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1
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940
views
RMA warning message about missing se.exprs
Survival Cancer cdf genefilter simpleaffy Survival Cancer cdf genefilter simpleaffy
updated 18.5 years ago by 25k • written 18.5 years ago by ▴ 110
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BioC 2.0 is available
SNP Microarray Genetics Annotation Visualization Bayesian Survival GUI Cancer adme16cod
18.6 years ago Seth Falcon ★ 7.4k
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3
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2.3k
views
Can't get RCurl...
GO Survival annotate genefilter affy graph limma GOstats biomaRt Category affycoretools
updated 18.6 years ago by 68k • written 18.6 years ago by ★ 2.2k
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2
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2.1k
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"AveExp" column has dissappeared from limma topTable
GO Survival annotate geneplotter affydata limma annaffy affyPLM GO Survival annotate
updated 18.6 years ago by 53k • written 18.6 years ago by ▴ 680
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1.4k
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topTable "resort.by" broken...
GO Survival Biobase annotate genefilter affy affydata graph gcrma matchprobes annaffy
updated 18.7 years ago by 53k • written 18.7 years ago by ★ 2.2k
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1
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1.7k
views
question about limma2annaffy
GO Survival Biobase annotate genefilter geneplotter affy affydata graph limma annaffy
updated 18.7 years ago by 68k • written 18.7 years ago by ★ 2.2k
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1
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1.1k
views
Normalization in davidTiling demo
Normalization GO Survival Biobase genefilter geneplotter affy vsn PROcess tilingArray GO
updated 18.7 years ago by ★ 13k • written 18.7 years ago by ★ 1.3k
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1
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1.3k
views
Normalization in davidTiling demo
Normalization GO Survival genefilter geneplotter affy vsn tilingArray affyio GO Survival
updated 18.7 years ago by ★ 13k • written 18.7 years ago by ★ 1.3k
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2
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2.0k
views
can't load affycoretools because GOstats is broken. Can I load affycoretools without dependencies to use some functions?
GO Survival Biobase genefilter affy limma RBGL GOstats Category affyio affycoretools GO
18.8 years ago Mark W Kimpel ▴ 830
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8
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2.3k
views
oligo on R 2.4.1?
GO Survival annotate genefilter affy affydata matchprobes affyQCReport affyio oligo GO
updated 18.8 years ago by ★ 7.4k • written 18.8 years ago by ★ 2.2k
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1
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1.5k
views
annaffy errors
GO Survival mgu74av2 cdf annotate affy limma gcrma matchprobes annaffy simpleaffy plier
updated 18.8 years ago by 68k • written 18.8 years ago by ▴ 320
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1
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2.2k
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using simpleaffy incorrectly, or is there a problem with the read.affy function?
Microarray Survival Cancer genefilter affy simpleaffy affyio Microarray Survival Cancer
18.9 years ago k. brand ▴ 420
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2
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1.6k
views
simpleaffy and yeast2cdf problems
Survival cdf genefilter affy simpleaffy Survival cdf genefilter affy simpleaffy
updated 18.9 years ago by ▴ 160 • written 18.9 years ago by ▴ 50
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11
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3.4k
views
trouble hacking plotPCA
GO Survival Biobase genefilter affy affydata graph limma gcrma matchprobes affyPLM RBGL
updated 18.9 years ago by ▴ 10 • written 19.0 years ago by ★ 2.2k
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10
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2.6k
views
Some Genefilter questions
Normalization Survival Cancer cdf genefilter geneplotter affy affydata widgetTools gcrma
updated 19.0 years ago by ▴ 460 • written 19.0 years ago by ▴ 70
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2
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1.4k
views
2fold sigchanges from limma
GO Survival hgu133a2 annotate hexbin limma gcrma matchprobes annaffy GO Survival hexbin
updated 19.0 years ago by 53k • written 19.0 years ago by ▴ 60
0
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12
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2.7k
views
Some Genefilter questions
GO Survival cdf genefilter geneplotter tkWidgets affy affydata widgetTools gcrma affyPLM
updated 19.0 years ago by ★ 5.5k • written 19.0 years ago by ▴ 460
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8
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views
AnnBuilder and Kegg
Pathways GO Survival Cancer Organism annotate affydata vsn AnnBuilder globaltest GO vsn
updated 19.0 years ago by ▴ 190 • written 19.0 years ago by ★ 2.9k
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1
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1.6k
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[R] Why SAM has totally diffent results in R2.1.1 and R2.4.0
Microarray Genetics Survival multtest siggenes safe Microarray Genetics Survival multtest
updated 19.0 years ago by ▴ 900 • written 19.0 years ago by 25k
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0
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help with RankProd plaase
GO Survival cdf genefilter multtest affy limma RankProd Category affycoretools GO cdf
19.0 years ago Kimpel, Mark W ▴ 890
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1
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1.5k
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warning from make.cdf.package - FYI
GO Survival cdf Biobase annotate genefilter graph makecdfenv limma gcrma matchprobes GO
updated 19.0 years ago by 68k • written 19.0 years ago by ★ 2.2k
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5
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2.2k
views
Importing CDF file for custom array using makecdfenv
Microarray GO Survival Cancer cdf Biobase annotate genefilter affy graph makecdfenv GO
updated 19.0 years ago by ▴ 20 • written 19.0 years ago by ★ 2.2k
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0
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1.5k
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problems with Affy vignette and affybatch objects
GO Survival cdf Biobase annotate genefilter multtest affy affydata graph limma gcrma
19.1 years ago Martin Morgan 25k
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4
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1.6k
views
problems with Affy vignette and affybatch objects
GO Survival cdf Biobase annotate genefilter multtest reposTools affy affydata graph GO
updated 19.1 years ago by 25k • written 19.1 years ago by ★ 2.2k
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2
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1.1k
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A question on GO annotations
Survival Survival
updated 19.1 years ago by ▴ 550 • written 19.1 years ago by ▴ 50
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0
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1.4k
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Error in xval: No Direct or Inherited Method for this call
Survival Biobase genefilter MLInterfaces Survival Biobase genefilter MLInterfaces
19.1 years ago Martin Morgan 25k
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0
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1.0k
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SAM with censored survival data on exprSet
Survival siggenes Survival siggenes
19.2 years ago mpg33@drexel.edu ▴ 90
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3
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2.4k
views
Situation of the legend in the plotPCA of the affycoretools library
GO Survival cdf annotate genefilter multtest affy graph limma RBGL GOstats Category GO
updated 19.2 years ago by 68k • written 19.2 years ago by ▴ 350
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1
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1.1k
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qc
Survival Biobase genefilter affy affydata affyPLM simpleaffy affyio Survival Biobase
updated 19.3 years ago by 68k • written 19.3 years ago by ▴ 10
0
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2
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1.8k
views
problem loading affycoretools
Survival hgu95av2 Biobase Ruuid annotate genefilter multtest affydata graph limma gcrma
19.3 years ago Jenny Drnevich ★ 2.2k
0
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0
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1.3k
views
[SPAM?] Bioconductor Digest, Vol 41, Issue 22 (Out of Office)
SNP Microarray Annotation GO Network Clustering Survival Cancer hgu133a cdf probe affy
19.3 years ago Todd Nick ▴ 10
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0
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902
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error in simpleaffy qc: I'm sorry, I do not know about chip type: poplarcdf
Survival cdf genefilter affy simpleaffy Survival cdf genefilter affy simpleaffy
19.3 years ago Levi Waldron ▴ 30
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1
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1.4k
views
Newbie 'rflowcyt' question; problem loading facscan256.fcs
Survival Infrastructure Cancer hexbin prada rfcdmin rflowcyt Survival Infrastructure
updated 19.5 years ago by ★ 7.4k • written 19.5 years ago by ▴ 80
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2
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1.2k
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subset eset by row broken
Survival rgu34a multtest affy Survival rgu34a multtest affy
19.5 years ago Kimpel, Mark W ▴ 890
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3
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1.8k
views
error in mas5calls() for soybean chip
Survival hu6800 cdf probe Biobase genefilter reposTools affy affydata limma gcrma made4
updated 19.6 years ago by ▴ 70 • written 19.6 years ago by ★ 2.2k
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2
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1.3k
views
justRMA using incorrect default cdf
GO Survival rat2302 cdf annotate genefilter affy limma affycoretools GO Survival cdf
19.8 years ago Kimpel, Mark W ▴ 890
0
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1
reply
5.0k
views
R package Installation Errors
Survival Biobase affy Survival Biobase affy
updated 19.9 years ago by 25k • written 19.9 years ago by ▴ 60
0
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1
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3.3k
views
Displaying multiple survival curves on one graph
Survival graph Survival graph
updated 20.0 years ago by ★ 7.4k • written 20.0 years ago by ▴ 30
113 results • Page 2 of 3
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Comment: Bioconductor 3.22 Release Schedule by loganlstevens • 0
This release reminds me of the strategies in [solitaired](https://solitaired.io) to overcome live solitaires.
Answer: Create consensusMatrix for codon bases by Kevin Blighe ★ 4.0k
To address your query on generating a codon frequency matrix analogous to the output from `consensusMatrix` for a `DNAStringSet` object, no…
Answer: Finding duplicated entries in GRangesList by Kevin Blighe ★ 4.0k
The duplicated and unique functions operate element-wise on GRangesList objects. This means that they apply the respective function to each…
Answer: sigDF object in sesame by Kevin Blighe ★ 4.0k
Your interpretation of the column headers in the SigDF object is correct: MG corresponds to the methylated signal intensity in the green ch…
Answer: DESeq2 on non-RNASeq counts data by Kevin Blighe ★ 4.0k
The use of DESeq2 for count data from artificial sequences is acceptable, as the program models counts via a negative binomial distribution…
Votes
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
Answer: Identifying differentially expressed genes in individual samples from a large co
Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction
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