Showing : TCGABiolinks • reset
4
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8
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1.2k
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TCGAbiolinks cannot find bcr_patient_barcode
TCGAbiolinks
11 months ago • updated 10 months ago Habil Zare ▴ 200
0
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4
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293
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I need to calculate the survival rate of TCGA databases
TCGAbiolinks Survival
updated 11 weeks ago by ▴ 730 • written 11 weeks ago by • 0
0
votes
4
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995
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GDCdownload Directory Problem :(
TCGAWorkflowData TCGAbiolinks
updated 10 weeks ago by 690 • written 2.0 years ago by • 0
1
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3
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3.1k
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maftools: Error in validateMaf(maf = maf, isTCGA = isTCGA, rdup = removeDuplicatedVariants, : missing required fields from MAF: Chromosome
software error maftools tcgabiolinks
updated 6 weeks ago by ▴ 20 • written 6.6 years ago by ▴ 100
0
votes
1
reply
400
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Problems when running GDC_prepare in R
TCGAbiolinks error GDC_prepare
6 months ago leon • 0
0
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1
reply
226
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TCGA clinical data: Multiple measure of response columns in merged clinical xml file.
TCGAbiolinks TCGA clinical TCGA-BRCA
written 7 weeks ago by • 0
0
votes
1
reply
619
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How to identify the batch informations from the sample ID?
TCGAbiolinks BatchQC BatchEffect
updated 8 months ago by • 0 • written 14 months ago by ▴ 20
0
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0
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147
views
TCGAbiolinks STAD project 450k Methylation Beta Value data
MethylationArray normalize450K TCGAbiolinks Normalization MethylationArrayData
8 weeks ago • updated 6 weeks ago Giovanni Calice ▴ 160
1
vote
0
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171
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Rnaseq sample barcode does not match barcode from TCGA Methylation data
TCGAMethylation450k MethylationArray TCGAbiolinks Tcga TCGAbiolinksGUI.data
9 weeks ago BioinfoMug • 0
0
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0
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152
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champ.load() from .idat files of GDC/TCGA dataset
TCGAbiolinks ChAMP
3 months ago Thalita • 0
0
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0
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249
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Where/how are TCGAbiolinks colData column names sourced from?
clinical TCGAbiolinks
9 months ago BioInfoBeginnerrr • 0
0
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0
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166
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GDC slides download
TCGAbiolinks
10 weeks ago jain72744 • 0
12 results • Page 1 of 1
Recent ...
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Answer: DESeq2 v1.35.0 by Michael Love 41k
That is not a release (odd 'y' digit). See Bioconductor help pages: https://contributions.bioconductor.org/description.html#description-ver…
Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i by James W. MacDonald 65k
Please don't piggyback on posts from 2.3 years ago. If you have a question, post as a new question.
Answer: DESeq2 v1.35.0 by James W. MacDonald 65k
Odd release versions indicate a devel version, which upon release is incremented to the next even version, so you won't be able to find tha…
Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i by fatinataly • 0
I tried also with oligo does not work, any other suggestion?
Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70
Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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