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News: Opportunity for Carpentries Instructors to Teach Bioconductor in Africa
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15 months ago Maria Doyle ▴ 110
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News: Bioconductor Carpentries instructor training
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3.2 years ago Maria Doyle ▴ 110
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News: Bioconductor teaching week
teaching Carpentries
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Job: Lecturer in Statistics - School of Mathematics and Statistics - University of St Andrews
computational teaching statistics research
3.5 years ago Andy Lynch ▴ 120
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Job: Bioconductor Community Manager
Community Teaching Bioconductor
3.6 years ago Matthew Ritchie ▴ 1000
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Job: Research software engineer at the de Duve Institute, UCLouvain (Brussels, Belgium)
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7.2 years ago Laurent Gatto 1.6k
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EdgeR: Explaning dispersion types to newbies
edger dispersion estimatedispersions visualization teaching
updated 7.6 years ago by ★ 29k • written 7.6 years ago by ▴ 20
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News: New Master of Science in Quantitative and Computational Biology at University of Trento, Italy
computational biology bioinformatics teaching master News
updated 9.5 years ago by • 0 • written 9.6 years ago by ▴ 10
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News: Bioconductor-related papers -- special F1000Research collection for Bioc2016
publication workflows benchmark teaching News
updated 9.8 years ago by ▴ 10 • written 9.8 years ago by ★ 13k
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Comment: Clarification on counting in Rsubread (featureCounts) by Gordon Smyth 53k
Have you told featureCounts to do strand-specific counting? As pointed out by Frances Turner, you can lose reads if they overlap the gene …
Answer: Clarification on counting in Rsubread (featureCounts) by Frances Turner ▴ 10
You should look at the summary files produced by feature counts. This gives a breakdown of what happened to reads that were not assigned. Y…
Comment: Incosistencies in buildSNNGraph() function by ATpoint ★ 5.0k
Just played with this a bit and I think it comes down to not having a fixed seed before running the leiden thingy. Same goes for PCA and UM…
Answer: Incosistencies in buildSNNGraph() function by Aaron Lun ★ 29k
The most obvious thing that comes to mind is the RNG seed. `cluster_leiden()` does some random number generation, somewhere deep in the **i…
Comment: Opportunity to host EuroBioC2026 Preconference workshops! by TikTsokaas33ocissalpc • 0
Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…
Votes
Answer: Clarification on counting in Rsubread (featureCounts)
C: RNA-Seq analysis with Limma/edgeR, time course experiment, aberrant results
C: RNA-Seq analysis with Limma/edgeR, time course experiment, aberrant results
A: Conversion from counts to FPKM
Answer: Incosistencies in buildSNNGraph() function
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