Showing : TxDb.Hsapiens.UCSC.hg19.knownGene • reset
2
votes
16
replies
3.4k
views
TxDb annotations for human chrM
GenomicFeatures TxDb.Hsapiens.UCSC.hg19.knownGene annotation
8.2 years ago • updated 8.1 years ago Robert Castelo ★ 3.0k
7
votes
4
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3.0k
views
PDCD1 missing from TxDb.Hsapiens.UCSC.hg38.knownGene?
txdb txdb.hsapiens.ucsc.hg19.knowngene txdb.hsapiens.ucsc.hg38.knowngene org.hs.eg.db annotation
7.0 years ago enricoferrero ▴ 660
5
votes
15
replies
2.4k
views
nearest genes using TxDb.Hsapiens.UCSC.hg19
txdb.hsapiens.ucsc.hg19.knowngene ChIPpeakAnno
updated 6.8 years ago by ★ 4.3k • written 6.8 years ago by ▴ 140
2
votes
6
replies
2.4k
views
TxDb.Hsapiens.UCSC.hg19.knownGene misannotation of a gene
txdb.hsapiens.ucsc.hg19.knowngene
updated 6.4 years ago by 62k • written 6.4 years ago by ▴ 190
1
vote
1
reply
2.1k
views
Use of org.Hs.eg.db and TxDb.Hsapiens.UCSC.hg19.knownGene
TxDb.Hsapiens.UCSC.hg19.knownGene org.hs.eg.db
updated 6.4 years ago by 6.6k • written 6.4 years ago by • 0
2
votes
2
replies
1.9k
views
Get the genomic coordinates for the coding sequence (CDS) of a gene
genomicfeatures txdb.hsapiens.ucsc.hg19.knowngene cds
6.6 years ago madsheilskov • 0
0
votes
1
reply
1.7k
views
Difference in TxDb.Hsapiens.UCSC.hg19.knownGene and UCSC knownGene
annotate exons txdb.hsapiens.ucsc.hg19.knowngene
7.8 years ago adnan.niazi • 0
2
votes
5
replies
1.6k
views
TxDb.Hsapiens.UCSC.hg19.knownGene Exons that are not part of any gene
TxDb.Hsapiens.UCSC.hg19.knownGene genomicfeatures annotation
7.2 years ago Aliaksei Holik ▴ 350
1
vote
10
replies
1.5k
views
UCSC web service API
txdb.hsapiens.ucsc.hg19.knowngene rtracklayer
updated 6.7 years ago by 25k • written 6.7 years ago by ▴ 290
6
votes
4
replies
1.4k
views
unlist a exons GRangeslist object and add a gene name column
granges grangeslist txdb.hsapiens.ucsc.hg19.knowngene
updated 5.4 years ago by 16k • written 5.4 years ago by ▴ 190
3
votes
10
replies
1.4k
views
POU5F1(OCT4) /ENTREZID: 5460 is not in the TxDb.Hsapiens.UCSC.hg19.knownGene
txdb.hsapiens.ucsc.hg19.knowngene
updated 5.5 years ago by ▴ 70 • written 5.5 years ago by ▴ 190
0
votes
2
replies
1.1k
views
locateVariants function does not find an annotation for the locus
locatevariants txdb.hsapiens.ucsc.hg19.knowngene variantannotation
5.6 years ago Aleksandra • 0
2
votes
3
replies
1.1k
views
A bug of "seqlevels<-" on TxDb
txdb.hsapiens.ucsc.hg19.knowngene seqlevels bugs
updated 6.3 years ago by 16k • written 6.3 years ago by ▴ 30
0
votes
2
replies
1.1k
views
Missing genes from TxDb.Hsapiens.UCSC.hg19.knownGene
txdb txdb.hsapiens.ucsc.hg19.knowngene gviz
updated 5.5 years ago by 62k • written 5.5 years ago by ▴ 10
3
votes
4
replies
1.0k
views
No annotation for single SNPs
variantannotation SNPs txdb.hsapiens.ucsc.hg19.knowngene ucsc
updated 5.8 years ago by ★ 6.7k • written 5.8 years ago by • 0
3
votes
3
replies
977
views
Genes found on particular chromosome using two methods in TxDb.Hsapiens.UCSC.hg19.knownGene were not identical
txdb.hsapiens.ucsc.hg19.knowngene txdb
updated 6.6 years ago by 25k • written 6.6 years ago by ▴ 450
0
votes
2
replies
943
views
SNPs in multiple locations
txdb.hsapiens.ucsc.hg19.knowngene ucsc annotation locatevariants variantannotation
updated 5.8 years ago by ★ 6.7k • written 5.8 years ago by • 0
2
votes
4
replies
937
views
Problem with extracting information about exons from TxDb.Hsapiens.UCSC.hg19.knownGene: incorrect number of exons and overlapping exons
txdb txdb.hsapiens.ucsc.hg19.knowngene granges exons ucsc
updated 4.3 years ago by 62k • written 4.3 years ago by ▴ 10
12
votes
2
replies
863
views
`TxDb.Hsapiens.UCSC.hg19.knownGene` and `EnsDb.Hsapiens.v75` can't be installed anymore
EnsDb.Hsapiens.v75 TxDb.Hsapiens.UCSC.hg19.knownGene
2.2 years ago Batool ▴ 370
0
votes
1
reply
817
views
problem with TxDb.Hsapiens.UCSC.hg19.knownGene
TxDb.Hsapiens.UCSC.hg19.knownGene
updated 5.5 years ago by 62k • written 5.5 years ago by • 0
0
votes
2
replies
778
views
GenomicFeatures coordinates UCSC
genomicfeatures txdb.hsapiens.ucsc.hg19.knowngene
7.0 years ago ribioinfo ▴ 100
0
votes
1
reply
756
views
How to extract BOTH exon and matched transcript ID from TxDb.Hsapiens.UCSC.hg19.knownGene database?
txdb.hsapiens.ucsc.hg19.knowngene
updated 5.0 years ago by 62k • written 5.0 years ago by • 0
22 results • Page 1 of 1
Recent ...
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Answer: RPPA data (Proteomics analysis) by Gordon Smyth 47k
Manipulating results is easy in R and limma. Just read the examples and documentation, for example `help("topTable")`. The limma results i…
Comment: Question about filter by expression (filterByExpr) in edgeR by Gordon Smyth 47k
Something like what? I advised you to use "all treatment factors" and use the "whole design matrix" but instead you haven't used the desig…
Comment: Full list of differential genes not obtained in topTable by Ankita • 0
thank you I tried it and it worked.
Answer: Full list of differential genes not obtained in topTable by Gordon Smyth 47k
When you have a question, the first thing you can do to help yourself is to read the help page for the function, in this case `?topTable`. …
Comment: Question about filter by expression (filterByExpr) in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Meaning, something like the the below? filterByExpr (y)
Votes
Comment: Gene Onotology: Can't get the goana function to work
Answer: Unable to upload an App in shinyapps.io with bioconductor packages
Comment: Help with Error in DiffBind
A: How to deal with Affymetrix GeneChip probeids that map to multiple genes
Comment: Failed to install Biobase
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