Bioconductor Tximport

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deseq2 tximport

updated 7 months ago by Michael Love 43k • written 5.7 years ago by zroger499 • 0

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4.3k

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Tutorial tximport

updated 4 months ago by Michael Love 43k • written 7.7 years ago by nelson.s.garcia ▴ 10

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tximport rhdf5

10 months ago • updated 9 months ago Sofia • 0

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kallisto tximport TOIL

10 months ago Nicholas • 0

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kallisto tximport ensembl

updated 6 months ago by Abbott • 0 • written 7 months ago by Nicholas • 0

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2.7k

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DESeq2 tximport

updated 9 months ago by ben • 0 • written 3.3 years ago by L ▴ 50

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772

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tximport

updated 7 months ago by Michael Love 43k • written 7 months ago by Nicholas • 0

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591

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tximport DESeq2

updated 6 months ago by James W. MacDonald 68k • written 6 months ago by IUH • 0

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513

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tximport tximeta Bioconductor

updated 8 months ago by ATpoint ★ 5.0k • written 8 months ago by yob4003 • 0

9 results • Page 1 of 1

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Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

Cool, glad to hear I wasn't missing some functionality in DESeq2. I don't know that much about the differences between DESeq2 vs edgeR; my …

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k

Yes, so for one thing, note that Gordon has provided code for doing what you are asking in edgeR, which you can go ahead and use. You aske…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

I don't think DESeq2 has the ability to do multi-contrast comparisons, at least based on what I can understand of the manual; I can pick mu…

Comment: Upcoming Ensembl API and data access changes - new blog post available by Hugo Gruson • 0

Thanks for the update. To be very explicit: what is going to happen to the Biomart service, on which the biomaRt bioconductor package relie…

Comment: Are individual-mouse-based statistics possible in CellChat? by LillianaVolkman99 • 0

thank you very much. https://www.biostars.org/p/9617271/

Votes

A: DESeq2: Is it possible to convert read counts to expression values via TPM and r

A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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