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UCSCtrack
•
reset
3
votes
5
replies
1.7k
views
UcscTrack and BED without headers
gviz
BED
Ucsc
UcscTrack
8.3 years ago
Andy91
▴ 60
2
votes
4
replies
2.7k
views
Error using Gviz and BiomartGeneRegionTrack, version problem?
Gviz-package
biomart
plottracks
ucsctrack
stickleback
updated 7.1 years ago by
florian.hahne@novartis.com
★ 1.6k • written 7.2 years ago by
br
• 0
1
vote
4
replies
2.6k
views
Giemsa stain annotation/nomenclature for UCSC cytoband tracks
ucsc
ucsctrack
ggbio
Gviz
hg19
updated 7.2 years ago by
maximilianh
▴ 10 • written 7.2 years ago by
metamaden
▴ 10
2
votes
2
replies
1.2k
views
Can't display protein domain data from UCSC table unipDomain using Gviz
Gviz
protein
visualization
UcscTrack
protein domains
updated 3.7 years ago by
James W. MacDonald
65k • written 3.7 years ago by
paul.jaschke
▴ 10
1
vote
1
reply
991
views
Gviz: UcscTrack() getting error when there is no genes in the region
givz
UcscTrack
7.7 years ago
shuoguo
▴ 10
1
vote
4
replies
4.2k
views
How to display gene symbols in UCSC Track in Gviz
gviz
ucsctrack
hgnc
updated 7.0 years ago by
James W. MacDonald
65k • written 7.0 years ago by
Greg G.
• 0
0
votes
0
replies
918
views
Gviz: Is it possible to plot coding (thick boxes) and non-coding (thin boxes) regions for an UcscTrack?
Gviz
gene names
thinBoxFeature
UCSCtrack
7.7 years ago
angela.heck
• 0
0
votes
2
replies
1.2k
views
How to get UCSC url when use rtracklayer, contain the track in the url ,it may be very useful
rtracklayer
UCSC
ucsctrack
updated 6.4 years ago by
James W. MacDonald
65k • written 6.4 years ago by
zhangqshxxzz
• 0
0
votes
0
replies
1.1k
views
gviz UcscTrack label with HGNC gene symbol
gviz
ucsctrack
genesymbols
7.5 years ago
dmb107
• 0
9 results • Page
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Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
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by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
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I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
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It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024). In the meantime, you could consider using the goana() and kegga() …
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
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Answer: limma Intercept vs No-intercept models completely changing DMR results?
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Comment: Too many significant genes when integrating gtex and tcga
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