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13.4 years ago
Lorenzo Melchor
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updated 13.3 years ago by
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written 13.3 years ago by
Rick Frausto
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rgentleman
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written 15.7 years ago by
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updated 13.5 years ago by
James W. MacDonald
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written 13.5 years ago by
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updated 16.0 years ago by
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updated 17.4 years ago by
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written 17.4 years ago by
Kimpel, Mark W
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written 13.8 years ago by
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updated 17.8 years ago by
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written 17.8 years ago by
Wolfgang Raffelsberger
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updated 13.2 years ago by
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written 13.2 years ago by
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updated 15.9 years ago by
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written 15.9 years ago by
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Wittner, Ben
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Craig Parman
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15.7 years ago
Yisong Zhen
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Seth Falcon
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Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
•
0
Thank for your response. It is Illumina 450 K. I use this code
```{r }
library(IlluminaHumanMethylation450kanno.ilmn12.hg19)
annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★
5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed):
```
limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
•
0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
ATpoint
★
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Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
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