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Showing :
affyqcreport
•
reset
0
votes
3
replies
1.7k
views
Bioconductor 3.13 installer reports that affyQCReport is not available
Install
3.13
affyQCReport
updated 2.5 years ago by
Miguel
▴ 10 • written 2.5 years ago by
lsmatott
• 0
1
vote
3
replies
1.9k
views
QC for Affymetrix miRNA 4.0 arrays: Error from qc/QCReport
simpleaffy
affy
affyQCReport
9.2 years ago
federico.comoglio
▴ 100
0
votes
0
replies
1.1k
views
quality control of affy Chips for miRNA
miRNA
cdf
probe
affy
simpleaffy
affyQCReport
affycoretools
arrayQualityMetrics
miRNA
cdf
13.2 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
1
reply
1.0k
views
quality control of affy Chips for miRNA
miRNA
cdf
affy
simpleaffy
affyQCReport
affycoretools
miRNA
cdf
affy
simpleaffy
updated 13.2 years ago by
James W. MacDonald
65k • written 13.2 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
6
replies
1.5k
views
Unable to Generate QC Report for mogene10stv1
Annotation
GO
GUI
affy
PROcess
affyQCReport
Annotation
GO
GUI
affy
PROcess
affyQCReport
updated 13.3 years ago by
James W. MacDonald
65k • written 13.3 years ago by
Rick Frausto
▴ 110
0
votes
8
replies
1.5k
views
Unable to Generate QC Report for mogene10stv1
GO
affyQCReport
GO
affyQCReport
updated 13.4 years ago by
James W. MacDonald
65k • written 13.4 years ago by
Rick Frausto
▴ 110
0
votes
9
replies
2.1k
views
Error coerce in AffyQCReport
Cancer
Breast
affyQCReport
Cancer
Breast
affyQCReport
13.4 years ago
Lorenzo Melchor
▴ 50
0
votes
3
replies
1.3k
views
affyQCReport with drosgenome2cdf
affyQCReport
affyQCReport
updated 13.5 years ago by
James W. MacDonald
65k • written 13.5 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
0
replies
1.1k
views
drosophila2cdf in simpleaffy / affyQCReport
cdf
simpleaffy
affyQCReport
cdf
simpleaffy
affyQCReport
13.5 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
2
replies
999
views
Quality control on Human Affymetrix Exon microarrays
GO
Cancer
probe
affyQCReport
GO
Cancer
probe
affyQCReport
updated 13.8 years ago by
Wolfgang Huber
★ 13k • written 13.8 years ago by
Daniel Brewer
★ 1.9k
0
votes
0
replies
858
views
Affy exon array equivalents of QC packages (affyPLM, arrayQualityMetrics & affyQCReport)
Cancer
affyPLM
affyQCReport
arrayQualityMetrics
Cancer
affyPLM
affyQCReport
14.0 years ago
Daniel Brewer
★ 1.9k
0
votes
0
replies
979
views
.qcdef file
cdf
probe
affyQCReport
cdf
probe
affyQCReport
14.4 years ago
Leonor Palmeira
▴ 100
0
votes
1
reply
1.2k
views
library(affyQCReport)-NA(arg1); arrayQualityMetrics-no end
Cancer
cdf
affy
simpleaffy
affyQCReport
affyio
arrayQualityMetrics
Cancer
cdf
affy
updated 15.7 years ago by
rgentleman
★ 5.5k • written 15.7 years ago by
Yisong Zhen
▴ 200
0
votes
4
replies
1.4k
views
Quality control;Missing value;installation
Cancer
cdf
affy
affyQCReport
affyio
arrayQualityMetrics
Cancer
cdf
affy
affyQCReport
updated 15.7 years ago by
rgentleman
★ 5.5k • written 15.7 years ago by
Yisong Zhen
▴ 200
0
votes
16
replies
1.8k
views
missing value
cdf
affy
affyQCReport
cdf
affy
affyQCReport
updated 15.7 years ago by
Hervé Pagès
16k • written 15.7 years ago by
Yisong Zhen
▴ 200
0
votes
0
replies
798
views
QC report
cdf
affy
affyQCReport
cdf
affy
affyQCReport
15.7 years ago
Yisong Zhen
▴ 10
0
votes
1
reply
1.9k
views
.qcdef file
cdf
affyQCReport
cdf
affyQCReport
updated 15.9 years ago by
Mark Cowley
▴ 400 • written 15.9 years ago by
ucbtagi@ucl.ac.uk
▴ 20
0
votes
2
replies
873
views
question on affyQCReport vignette
affyQCReport
affyQCReport
updated 16.0 years ago by
Keith Satterley
▴ 450 • written 16.0 years ago by
Mark W Kimpel
▴ 830
0
votes
0
replies
1.0k
views
Bioconductor web page
GO
Cancer
tkWidgets
reposTools
widgetTools
simpleaffy
affyQCReport
affyio
GO
Cancer
16.9 years ago
Seth Falcon
★ 7.4k
0
votes
9
replies
1.8k
views
problem with function rma
Normalization
rat2302
cdf
genefilter
affy
simpleaffy
affyQCReport
affyio
Normalization
updated 16.9 years ago by
Seth Falcon
★ 7.4k • written 16.9 years ago by
julin@aecom.yu.edu
▴ 80
0
votes
3
replies
1.0k
views
AffyQCReport: "I'm sorry, I do not know about chip type" (celeganscdf)
cdf
genefilter
affy
simpleaffy
affyQCReport
cdf
genefilter
affy
simpleaffy
affyQCReport
updated 17.2 years ago by
Crispin Miller
★ 1.1k • written 17.2 years ago by
Emmanuel Levy
▴ 270
0
votes
8
replies
1.6k
views
oligo on R 2.4.1?
GO
Survival
annotate
genefilter
affy
affydata
matchprobes
affyQCReport
affyio
oligo
GO
updated 17.2 years ago by
Seth Falcon
★ 7.4k • written 17.2 years ago by
Jenny Drnevich
★ 2.2k
0
votes
0
replies
946
views
AffyQCReport: "I'm sorry, I do not know about chip type" (celeganscdf)
cdf
probe
genefilter
affy
simpleaffy
affyQCReport
cdf
probe
genefilter
affy
simpleaffy
17.2 years ago
Wu, Xiwei
▴ 350
0
votes
4
replies
1.3k
views
error with AffyQCReport
cdf
annotate
affy
limma
RBGL
simpleaffy
GOstats
affyQCReport
cdf
annotate
affy
limma
updated 17.2 years ago by
Wolfgang Huber
★ 13k • written 17.2 years ago by
Mark W Kimpel
▴ 830
0
votes
2
replies
1.6k
views
problem with hist.default in affystart in package affycoretools
GO
cdf
annotate
affy
limma
RBGL
simpleaffy
GOstats
Category
affyQCReport
affyio
GO
cdf
updated 17.4 years ago by
James W. MacDonald
65k • written 17.4 years ago by
Kimpel, Mark W
▴ 890
0
votes
1
reply
1.1k
views
qc function missing in Linux version of simpleaffy
cdf
genefilter
affy
affydata
simpleaffy
affyQCReport
affyio
cdf
genefilter
affy
affydata
updated 17.8 years ago by
James W. MacDonald
65k • written 17.8 years ago by
Wolfgang Raffelsberger
▴ 160
0
votes
0
replies
884
views
Why mm's changing after bg.adjust.gcrma?
drosgenome1
cdf
Biobase
reposTools
affy
gcrma
affyPLM
simpleaffy
affyQCReport
affyio
cdf
17.9 years ago
Jenny Drnevich
★ 2.2k
0
votes
0
replies
810
views
simpleAffy, custom chip error
GO
cdf
probe
gcrma
simpleaffy
affyQCReport
GO
cdf
probe
gcrma
simpleaffy
affyQCReport
18.0 years ago
Wittner, Ben
▴ 290
0
votes
4
replies
1.2k
views
problem with loading affyQCReport
simpleaffy
affyQCReport
simpleaffy
affyQCReport
updated 18.4 years ago by
Seth Falcon
★ 7.4k • written 18.4 years ago by
Tuomas Raitila
▴ 10
0
votes
0
replies
610
views
Re: how to evaluate the arrays quality
affyQCReport
affyQCReport
18.9 years ago
Craig Parman
▴ 10
30 results • Page
1 of 1
Recent ...
Replies
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…
Comment: Differences in differential analysis methods for RNA-Seq
by
james.zhang20
• 0
Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…
Comment: Deseq2 and Normalization of RNA sequencing data
by
ATpoint
★ 4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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