Bioconductor AnnotationHub

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5.6k

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ensembl ensembldb plant arabidopsis thaliana annotationhub

updated 28 days ago by Shiva • 0 • written 5.4 years ago by Guido Hooiveld ★ 3.9k

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5.8k

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Ensembl Rstudio ensembldb AnnotationHub ensdb

updated 7 weeks ago by shepherl 3.9k • written 2.3 years ago by jon.klonowski ▴ 40

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330

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DNAMethylation AnnotationHub EPICv2manifest annotation

updated 22 days ago by Tim Peters ▴ 170 • written 4 weeks ago by s.malik • 0

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4.4k

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AnnotationHub AnnotationForge Pseudomonas_aeruginosa

updated 5 months ago by James W. MacDonald 65k • written 17 months ago by Manmohit ▴ 10

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4.8k

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BiocFileCache AnnotationHub ExperimentHub

6 months ago • updated 10 days ago shepherl 3.9k

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1.2k

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clusterProfiler Annotationhub

updated 6 months ago by Guido Hooiveld ★ 3.9k • written 6 months ago by BS • 0

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5.0k

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clusterProfiler AnnotationHub GO uniprot

updated 12 weeks ago by Guido Hooiveld ★ 3.9k • written 3.2 years ago by Alberto • 0

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333

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Atlanticsalmon clusterPro Salmosalar AnnotationHub GeneOntology

updated 9 weeks ago by Michael Love 41k • written 9 weeks ago by Filipe • 0

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569

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tximeta AnnotationHub AnnotationHubData

6 months ago Thon • 0

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165

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annotatr AnnotationHub

3 months ago hayleyw • 0

10 results • Page 1 of 1

Recent ...

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Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0

Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …

Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k

Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…

Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k

Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k

You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …

Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k

In that case both time and treatment are identical things, so choose one and go with it.

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Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

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