Bioconductor Annotationhub

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5.5k

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ensembl ensembldb plant arabidopsis thaliana annotationhub

updated 22 days ago by Shiva • 0 • written 5.4 years ago by Guido Hooiveld ★ 3.9k

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5.7k

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Ensembl Rstudio ensembldb AnnotationHub ensdb

updated 6 weeks ago by shepherl 3.8k • written 2.3 years ago by jon.klonowski ▴ 40

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311

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DNAMethylation AnnotationHub EPICv2manifest annotation

updated 15 days ago by Tim Peters ▴ 170 • written 24 days ago by s.malik • 0

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4.3k

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AnnotationHub AnnotationForge Pseudomonas_aeruginosa

updated 5 months ago by James W. MacDonald 65k • written 16 months ago by Manmohit ▴ 10

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4.7k

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BiocFileCache AnnotationHub ExperimentHub

6 months ago • updated 4 days ago shepherl 3.8k

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1.2k

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clusterProfiler Annotationhub

updated 6 months ago by Guido Hooiveld ★ 3.9k • written 6 months ago by BS • 0

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4.9k

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clusterProfiler AnnotationHub GO uniprot

updated 11 weeks ago by Guido Hooiveld ★ 3.9k • written 3.2 years ago by Alberto • 0

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323

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Atlanticsalmon clusterPro Salmosalar AnnotationHub GeneOntology

updated 8 weeks ago by Michael Love 41k • written 8 weeks ago by Filipe • 0

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552

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tximeta AnnotationHub AnnotationHubData

6 months ago Thon • 0

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156

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annotatr AnnotationHub

3 months ago hayleyw • 0

10 results • Page 1 of 1

Recent ...

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Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

Votes

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length