Bioconductor Annotationhub

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4.7k

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BiocFileCache AnnotationHub ExperimentHub

6 months ago • updated 3 days ago shepherl 3.8k

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5.5k

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ensembl ensembldb plant arabidopsis thaliana annotationhub

updated 21 days ago by Shiva • 0 • written 5.4 years ago by Guido Hooiveld ★ 3.9k

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308

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DNAMethylation AnnotationHub EPICv2manifest annotation

updated 15 days ago by Tim Peters ▴ 170 • written 23 days ago by s.malik • 0

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323

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Atlanticsalmon clusterPro Salmosalar AnnotationHub GeneOntology

updated 8 weeks ago by Michael Love 41k • written 8 weeks ago by Filipe • 0

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156

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annotatr AnnotationHub

3 months ago hayleyw • 0

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4.3k

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AnnotationHub AnnotationForge Pseudomonas_aeruginosa

updated 4 months ago by James W. MacDonald 65k • written 16 months ago by Manmohit ▴ 10

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1.2k

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clusterProfiler Annotationhub

updated 6 months ago by Guido Hooiveld ★ 3.9k • written 6 months ago by BS • 0

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552

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tximeta AnnotationHub AnnotationHubData

6 months ago Thon • 0

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5.7k

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Ensembl Rstudio ensembldb AnnotationHub ensdb

updated 6 weeks ago by shepherl 3.8k • written 2.3 years ago by jon.klonowski ▴ 40

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4.9k

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clusterProfiler AnnotationHub GO uniprot

updated 11 weeks ago by Guido Hooiveld ★ 3.9k • written 3.2 years ago by Alberto • 0

10 results • Page 1 of 1

Recent ...

Replies

Comment: Deseq2. decontXcounts not integers. Useful alternative? by camp ▴ 10

Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…

Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k

I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…

Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k

Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! I'll review my code from top to bottom.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.

Votes

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0