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ballgown
•
reset
1
vote
1
reply
1.9k
views
RNA-seq for DGE
stringtie
illumina
hisat2
ballgown
updated 8.0 years ago by
k.vitting.seerup
▴ 120 • written 8.0 years ago by
amy16
• 0
0
votes
1
reply
2.2k
views
Ballgown with replicates and the adjustvars option
ballgown
rnaseq
differential gene expression
updated 8.0 years ago by
Alyssa Frazee
▴ 210 • written 8.2 years ago by
o.diogosilva
• 0
2
votes
0
replies
1.3k
views
p-values, q-values, duplicated entries in output - ballgown
ballgown
rna-seq
q value
r
8.1 years ago
mkhasin
▴ 20
0
votes
1
reply
3.4k
views
Ballgown Error in file(file, "rt") : invalid 'description' argument
rna-seq
ballgown
updated 8.2 years ago by
Alyssa Frazee
▴ 210 • written 8.2 years ago by
vinayjrao
• 0
1
vote
7
replies
2.5k
views
Ballgown object construction error
ballgown
scan
error
package
8.4 years ago
spaque57
• 0
0
votes
0
replies
1.1k
views
Discordant Differential Expression
ballgown
8.4 years ago
lindsaynhayes
• 0
1
vote
3
replies
2.2k
views
limma regularization on Ballgown
ballgown
limma
updated 8.4 years ago by
Alyssa Frazee
▴ 210 • written 8.4 years ago by
rodri2006
▴ 10
0
votes
1
reply
2.1k
views
P value <0.05 and Q values~ 1
ballgown
updated 8.5 years ago by
Jeff Leek
▴ 650 • written 8.5 years ago by
akilabioinfo
• 0
3
votes
5
replies
8.0k
views
Ballgown up and down regulated genes
ballgown
differential expression
updated 8.5 years ago by
kapeelc
• 0 • written 9.8 years ago by
psbpedrobarbosa
▴ 10
0
votes
4
replies
2.3k
views
Results with very few genes with qval <0.05
ballgown
updated 8.6 years ago by
aiwa
• 0 • written 8.7 years ago by
jdchc
• 0
2
votes
8
replies
6.7k
views
StringTie + Ballgown: handling biological replicates
ballgown
stringtie
updated 8.7 years ago by
linda.boshans
• 0 • written 9.7 years ago by
bhawley1991
▴ 10
0
votes
0
replies
1.5k
views
Please help with ballgown problem
ballgown
differential expression
8.7 years ago
Sara
▴ 20
0
votes
2
replies
1.7k
views
IRanges error loading rsem data into ballgown
ballgown
updated 8.7 years ago by
Jeff Leek
▴ 650 • written 8.7 years ago by
jchenpku
• 0
0
votes
8
replies
4.6k
views
The common error with ballgown has not been solved!
ballgown
software error
updated 8.7 years ago by
Jeff Leek
▴ 650 • written 8.7 years ago by
Sara
▴ 20
1
vote
7
replies
4.1k
views
How fold change is calculated in Ballgown?
ballgown
8.8 years ago
Ir
• 0
0
votes
2
replies
2.8k
views
HISAT-StringTie-Ballgown, order of biological replicates in script design
ballgown
rna-seq
updated 8.8 years ago by
Alyssa Frazee
▴ 210 • written 8.8 years ago by
Ir
• 0
0
votes
3
replies
2.4k
views
Error in ball gown command
rnaseq
ballgown
differential gene expression
updated 8.9 years ago by
Jeff Leek
▴ 650 • written 8.9 years ago by
kritikamish99
▴ 10
2
votes
5
replies
4.6k
views
processing data with 2 rep or one replicate by ballgown
ballgown
differential gene expression
updated 9.0 years ago by
Alyssa Frazee
▴ 210 • written 9.1 years ago by
boyashuang
• 0
0
votes
2
replies
2.2k
views
I'm worried that I can't use "ballgown" well
ballgown
rnaseq
updated 9.0 years ago by
James W. MacDonald
68k • written 9.0 years ago by
noset2769
• 0
1
vote
3
replies
1.8k
views
Interaction term analysis using ballgown
ballgown
stringtie
voom limma
differential gene expression
rnaseq
updated 9.1 years ago by
Alyssa Frazee
▴ 210 • written 9.1 years ago by
jcalis
▴ 10
2
votes
2
replies
1.3k
views
Ballgown Custom Model Question
ballgown
rnaseq
updated 9.2 years ago by
Jeff Leek
▴ 650 • written 9.2 years ago by
daniel.gaston
• 0
0
votes
4
replies
2.3k
views
Ballgown from StringTie results transcripts which are not expressed in both conditions as Differentially expressed ones
ballgown
stringtie
updated 9.3 years ago by
Jeff Leek
▴ 650 • written 9.3 years ago by
alva.james
• 0
2
votes
7
replies
3.7k
views
ballgown custom models
ballgown
linear model
model matrix
custom model
9.6 years ago • updated 9.5 years ago
sbcn
▴ 80
0
votes
1
reply
2.5k
views
trying to use ballgown with Sailfish/Salmon pipeline
rnaseq
multi-mapped reads
ballgown
salmon
timecourse
10.3 years ago
friederike.mgh
• 0
3
votes
3
replies
2.2k
views
Specifying a Default Model in Ballgown
ballgown
updated 10.4 years ago by
Alyssa Frazee
▴ 210 • written 10.4 years ago by
andrea.hodgins.davis
• 0
75 results • Page
2 of 2
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This should now be resolved
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Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
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