Bioconductor Bigwig

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2.1k

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DESeq2 edgeR bigwig limma

2.5 years ago • updated 2.2 years ago Bogdan ▴ 670

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replies

2.4k

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bedgraph wiggleplotr bigwig wig

updated 2.6 years ago by complaintguide • 0 • written 2.6 years ago by Bogdan ▴ 670

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1.9k

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bigWig RNASeqData

3.2 years ago • updated 3.1 years ago bas_work ▴ 30

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2.3k

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software error BigWig import windows

5.0 years ago lsilva.m • 0

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2.4k

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wiggleplotr bigwig coverage ngs

updated 7.5 years ago by kaur.alasoo ▴ 30 • written 7.5 years ago by borgmichael • 0

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3.7k

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bigwig rtracklayer import granges grangeslist

updated 7.7 years ago by Michael Lawrence ★ 11k • written 7.7 years ago by Assa Yeroslaviz ★ 1.5k

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1.4k

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rtracklayer bigwig import

updated 8.4 years ago by Michael Lawrence ★ 11k • written 8.4 years ago by zx8754 ▴ 10

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1.7k

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bigwig rtracklayer export.bw

updated 8.4 years ago by Michael Lawrence ★ 11k • written 8.4 years ago by story.benjamin ▴ 20

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2.8k

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rtracklayer bigwig

updated 9.1 years ago by laurent.lacroix ▴ 30 • written 9.2 years ago by koneill ▴ 30

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1.4k

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rtracklayer BigWig

updated 9.4 years ago by Michael Lawrence ★ 11k • written 9.4 years ago by dborgesrmit • 0

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Comment: Package developing and interoperation with Bioconductor by slizchap • 0

Thank you so much for your answer. This was very useful, I will optimize my functions so they can handle SE objects.

Comment: Package developing and interoperation with Bioconductor by slizchap • 0

Thank you so much for your answer, very useful!

Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Mike Smith ★ 6.6k

Tricky to try and debug this without some example files to work with. Can you provide the output of `traceback()` called immediately after…

Answer: Mismatch between Illumina Mouse Methylation BeadChip annotation and genome brows by James W. MacDonald 68k

The annotation data that is provided for this array is simply a repackaging of data that we get from Illumina, so any apparent inconsistenc…

Answer: Package developing and interoperation with Bioconductor by James W. MacDonald 68k

Ideally you would have S4 methods that dispatch on the incoming data structure, so people could call your main function using a `data.frame…

Votes

Comment: ComBat with repeated measures

Answer: Package developing and interoperation with Bioconductor

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?

Answer: Explannation for ROAST results

A: How DiffBind run PCA based on peak data?

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