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bigwig
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0
votes
1
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2.5k
views
bigwig to counts
DESeq2
edgeR
bigwig
limma
3.3 years ago • updated 3.0 years ago
Bogdan
▴ 670
0
votes
2
replies
2.9k
views
converting bedgraph into bigwig
bedgraph
wiggleplotr
bigwig
wig
updated 3.4 years ago by
complaintguide
• 0 • written 3.4 years ago by
Bogdan
▴ 670
0
votes
1
reply
2.1k
views
'Negative' and 'Positive' bigWig RNAseq files: how to deal with these???
bigWig
RNASeqData
3.9 years ago
bas_work
▴ 30
0
votes
5
replies
2.8k
views
rtracklayer::import() BigWig issue on windows (solved)
software error
BigWig
import
windows
5.8 years ago
lsilva.m
• 0
0
votes
1
reply
2.8k
views
Plotting bigwig coverage over chromosomal coordinates with wiggleplotr
wiggleplotr
bigwig
coverage
ngs
updated 8.3 years ago by
kaur.alasoo
▴ 30 • written 8.3 years ago by
borgmichael
• 0
3
votes
15
replies
4.3k
views
(Big)wig file of complete chromosome
bigwig
rtracklayer
import
granges
grangeslist
updated 8.5 years ago by
Michael Lawrence
★ 11k • written 8.5 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
1
reply
1.6k
views
Strange first_time object in rtracklayer import
rtracklayer
bigwig
import
updated 9.2 years ago by
Michael Lawrence
★ 11k • written 9.2 years ago by
zx8754
▴ 10
2
votes
3
replies
1.9k
views
rtracklayer - export.bw bug
bigwig
rtracklayer
export.bw
updated 9.2 years ago by
Michael Lawrence
★ 11k • written 9.2 years ago by
story.benjamin
▴ 20
3
votes
9
replies
3.2k
views
export.bw produces enormous files (10^5 times bigger than they should be)
rtracklayer
bigwig
updated 9.9 years ago by
laurent.lacroix
▴ 30 • written 10.0 years ago by
koneill
▴ 30
0
votes
2
replies
1.6k
views
Rtracklayer creating large temp files when importing BigWigs
rtracklayer
BigWig
updated 10.1 years ago by
Michael Lawrence
★ 11k • written 10.2 years ago by
dborgesrmit
• 0
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Comment: Development of MSstat workflow to analyze DIA time series data
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Gordon Smyth
53k
Are there any other explanatory factors or covariates in your experiment other than time point? Do you have biological replicates at each t…
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Either of these choices is perfectly acceptable from an edgeR analysis point of view, it is more to do with which is more relevant for your…
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Your follow-up question is very much wider than the first, and is essentially a research question rather a software question. As one of the…
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I keep running into this error, please help: ``` Writing all sequences to './BSgenome.Panubis.NCBI.Panubis1.0/inst/extdata/single_sequenc…
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There is an example of how you can do this in the [DESeq vignette][1]. An alternative would be to fit a linear mixed model using the `vari…
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A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
Answer: Clarification on counting in Rsubread (featureCounts)
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