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bigwig
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0
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2.5k
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bigwig to counts
DESeq2
edgeR
bigwig
limma
3.2 years ago • updated 2.9 years ago
Bogdan
▴ 670
0
votes
2
replies
2.8k
views
converting bedgraph into bigwig
bedgraph
wiggleplotr
bigwig
wig
updated 3.3 years ago by
complaintguide
• 0 • written 3.3 years ago by
Bogdan
▴ 670
0
votes
1
reply
2.1k
views
'Negative' and 'Positive' bigWig RNAseq files: how to deal with these???
bigWig
RNASeqData
3.9 years ago
bas_work
▴ 30
0
votes
5
replies
2.7k
views
rtracklayer::import() BigWig issue on windows (solved)
software error
BigWig
import
windows
5.7 years ago
lsilva.m
• 0
0
votes
1
reply
2.7k
views
Plotting bigwig coverage over chromosomal coordinates with wiggleplotr
wiggleplotr
bigwig
coverage
ngs
updated 8.2 years ago by
kaur.alasoo
▴ 30 • written 8.2 years ago by
borgmichael
• 0
3
votes
15
replies
4.2k
views
(Big)wig file of complete chromosome
bigwig
rtracklayer
import
granges
grangeslist
updated 8.4 years ago by
Michael Lawrence
★ 11k • written 8.4 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
1
reply
1.6k
views
Strange first_time object in rtracklayer import
rtracklayer
bigwig
import
updated 9.1 years ago by
Michael Lawrence
★ 11k • written 9.1 years ago by
zx8754
▴ 10
2
votes
3
replies
1.9k
views
rtracklayer - export.bw bug
bigwig
rtracklayer
export.bw
updated 9.1 years ago by
Michael Lawrence
★ 11k • written 9.1 years ago by
story.benjamin
▴ 20
3
votes
9
replies
3.1k
views
export.bw produces enormous files (10^5 times bigger than they should be)
rtracklayer
bigwig
updated 9.9 years ago by
laurent.lacroix
▴ 30 • written 9.9 years ago by
koneill
▴ 30
0
votes
2
replies
1.6k
views
Rtracklayer creating large temp files when importing BigWigs
rtracklayer
BigWig
updated 10.1 years ago by
Michael Lawrence
★ 11k • written 10.1 years ago by
dborgesrmit
• 0
10 results • Page
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Comment: How does contrasts.fit do in limma to extract comparisons with a model having in
by
Gordon Smyth
53k
I refered you to the DiffVar package 11 months ago. Did you consider it? Your clarification makes it clear that your issue is not with lim…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in
by
jtsy6383
• 0
Thanks for the reply Gordon. I am also working on the project and have been tasked to reformulate and add some details. We're interested i…
Answer: How does contrasts.fit do in limma to extract comparisons with a model having in
by
Gordon Smyth
53k
The limma Users Guide explains how to test for interactions or to test for contrasts very easily. limma can work with any design matrix, bu…
Answer: NUPOP usage
by
shepherl
4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker?
by
fnfgame
• 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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