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bigwig
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bigwig to counts
DESeq2
edgeR
bigwig
limma
2.3 years ago • updated 2.1 years ago
Bogdan
▴ 670
0
votes
2
replies
2.3k
views
converting bedgraph into bigwig
bedgraph
wiggleplotr
bigwig
wig
updated 2.5 years ago by
complaintguide
• 0 • written 2.5 years ago by
Bogdan
▴ 670
0
votes
1
reply
1.8k
views
'Negative' and 'Positive' bigWig RNAseq files: how to deal with these???
bigWig
RNASeqData
3.0 years ago
bas_work
▴ 30
0
votes
5
replies
2.2k
views
rtracklayer::import() BigWig issue on windows (solved)
software error
BigWig
import
windows
4.9 years ago
lsilva.m
• 0
0
votes
1
reply
2.3k
views
Plotting bigwig coverage over chromosomal coordinates with wiggleplotr
wiggleplotr
bigwig
coverage
ngs
updated 7.4 years ago by
kaur.alasoo
▴ 30 • written 7.4 years ago by
borgmichael
• 0
3
votes
15
replies
3.6k
views
(Big)wig file of complete chromosome
bigwig
rtracklayer
import
granges
grangeslist
updated 7.5 years ago by
Michael Lawrence
★ 11k • written 7.5 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
1
reply
1.4k
views
Strange first_time object in rtracklayer import
rtracklayer
bigwig
import
updated 8.3 years ago by
Michael Lawrence
★ 11k • written 8.3 years ago by
zx8754
▴ 10
2
votes
3
replies
1.6k
views
rtracklayer - export.bw bug
bigwig
rtracklayer
export.bw
updated 8.3 years ago by
Michael Lawrence
★ 11k • written 8.3 years ago by
story.benjamin
▴ 20
3
votes
9
replies
2.7k
views
export.bw produces enormous files (10^5 times bigger than they should be)
rtracklayer
bigwig
updated 9.0 years ago by
laurent.lacroix
▴ 30 • written 9.1 years ago by
koneill
▴ 30
0
votes
2
replies
1.4k
views
Rtracklayer creating large temp files when importing BigWigs
rtracklayer
BigWig
updated 9.2 years ago by
Michael Lawrence
★ 11k • written 9.2 years ago by
dborgesrmit
• 0
10 results • Page
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Answer: To count or not to count multi-overlapping reads?
by
Gordon Smyth
52k
> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…
Comment: Weird p-values using DESeq2?
by
ATpoint
★ 4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…
Answer: Weird p-values using DESeq2?
by
Wolfgang Huber
★ 13k
Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…
Comment: How to visualize these pathways using pathview
by
ingrid.h
• 0
Yes I have seen it, thanks.
Comment: Store Matrix in DataFrame Cell
by
Dario Strbenac
★ 1.6k
It does not appear to work. > DataFrame(name = "test", value = list(matrix(1:4, ncol = 2))) DataFrame with 2 rows and 3 columns …
Votes
A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo
Comment: Weird p-values using DESeq2?
Comment: Overcoming confounding in batch effect correction
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
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