Showing : bioMart • reset
10
votes
10
replies
6.9k
views
biomaRt not working - lazy table error
error lazy R biomaRt table
updated 6 weeks ago by • 0 • written 6 months ago by ▴ 10
5
votes
4
replies
9.7k
views
Getting rs ids using chr coordinates | Biomart
SNP rs id Biomart Chromosome coordinates
updated 9 months ago by 65k • written 3.7 years ago by • 0
7
votes
5
replies
7.0k
views
biomaRt server error, and mirrors do not help
ensembl biomaRt R
updated 6 months ago by • 0 • written 2.0 years ago by ▴ 40
2
votes
2
replies
183
views
OrgDb for maize
clusterProfiler OrgDb biomaRt Zea_mays
updated 15 days ago by 65k • written 16 days ago by • 0
0
votes
3
replies
778
views
Error with makeTxDbFromBiomart
DEXSeq biomaRt
updated 8 months ago by 16k • written 9 months ago by • 0
0
votes
3
replies
149
views
Error retrieving ensembl gene id using biomaRt...
biomaRt
updated 15 days ago by 65k • written 15 days ago by ▴ 30
7
votes
6
replies
4.1k
views
Conversion of UniProt to Ensembl
biomaRt ensembldb UniProt.ws
updated 6 months ago by 690 • written 21 months ago by ▴ 20
1
vote
4
replies
671
views
biomaRt code/getBM function no longer importing 'coding' sequence via seqType argument, "Invalid attribute(s): coding" error
biomaRt
7 months ago andrew.b.kleist ▴ 10
1
vote
5
replies
606
views
Errors with makeTxDbFromBiomart
biomaRt
updated 8 months ago by 65k • written 8 months ago by ▴ 10
3
votes
3
replies
9.4k
views
How to find rsID with biomaRt in R
biomaRt
updated 12 weeks ago by 65k • written 3.2 years ago by ▴ 10
6
votes
9
replies
763
views
biomaRt has encountered an unknown server error.
biomaRt host useEnsembl
updated 3 months ago by • 0 • written 3 months ago by • 0
0
votes
3
replies
383
views
Obtaining rsIDs with ENSG and variant ID information
rsid biomaRt
updated 5 months ago by ★ 3.3k • written 5 months ago by ▴ 30
0
votes
2
replies
399
views
Problem with loading ensembl version 105.
biomaRt
4 months ago RC • 0
4
votes
2
replies
363
views
Enrichement with clusterProfiler and biomart
biomaRt clusterProfiler Zea_mays
updated 3 months ago by ★ 3.9k • written 3 months ago by • 0
1
vote
4
replies
1.1k
views
Issue with Biomart- cannot access ensembl
biomaRT
updated 6 weeks ago by 65k • written 4.0 years ago by • 0
1
vote
1
reply
400
views
Error with biomaRt
biomaRt
updated 3 months ago by ★ 6.5k • written 3 months ago by • 0
3
votes
2
replies
1.1k
views
ERROR in EnrichKEGG(), 'species should be listed' in, download method do not change
KEGG DESeq2 biomaRt clusterProfiler org.Mm.eg.db
updated 8 months ago by ★ 3.9k • written 8 months ago by ▴ 10
0
votes
1
reply
706
views
biomaRt_getBM_Failed to collect lazy table
getBM biomaRt
updated 5 months ago by 65k • written 5 months ago by • 0
0
votes
3
replies
1.0k
views
Problem installing biomaRt on mac
biomaRt mac
updated 8 months ago by ▴ 50 • written 18 months ago by • 0
22
votes
15
replies
7.5k
views
biomaRt error unable to fix: need help troubleshooting
biomaRt RNASeqData R
updated 5 months ago by ▴ 10 • written 2.1 years ago by ▴ 50
4
votes
4
replies
1.7k
views
biomaRt error: database disk image is malformed
biomaRt
updated 11 months ago by • 0 • written 2.6 years ago by ▴ 10
0
votes
1
reply
619
views
Trouble using biomaRt to pull pathway genes from GO
GO biomaRt
updated 9 months ago by 65k • written 9 months ago by • 0
0
votes
10
replies
815
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R BioMart biomaRt
5 months ago • updated 9 weeks ago ScafioRuo • 0
1
vote
2
replies
610
views
biomaRt not retrieving complete list of functional consequences associated with list of SNPs
ensembl R biomaRt
9 months ago Miguel • 0
0
votes
1
reply
222
views
biomaRt issue
biomaRt
updated 12 weeks ago by ★ 6.5k • written 12 weeks ago by • 0
0
votes
1
reply
291
views
error in mapIds function
mapIds biomaRt
updated 9 weeks ago by 690 • written 10 weeks ago by • 0
0
votes
2
replies
365
views
Biomart - upstream region of 'coding'
biomaRt
updated 7 months ago by ★ 6.5k • written 7 months ago by ▴ 20
4
votes
12
replies
965
views
Ensembl down???
biomaRt
5 months ago bas_work ▴ 30
0
votes
1
reply
830
views
multiple filters in biomaRt
biomaRt
updated 11 months ago by ▴ 10 • written 11 months ago by • 0
2
votes
4
replies
936
views
Use with_go along with other filters in getBM function
Annotation biomaRt
11 months ago RuBBiT0 ▴ 10
0
votes
2
replies
460
views
Issue with BiomaRt's getLDS: Query ERROR: caught BioMart::Exception::Query: returning undef ... missing attributes for your exportable
biomaRt
11 weeks ago eefernan5 • 0
0
votes
1
reply
142
views
Multiple affymatrix IDs mapping to a single gene name
biomaRt
updated 4 weeks ago by 65k • written 4 weeks ago by • 0
0
votes
2
replies
700
views
biomart not ound some prevous release
biomart rnaseq
written 5.2 years ago by ▴ 40
1
vote
2
replies
657
views
How to find stop codons for a list of genes
stopcodon biomaRt
5 months ago Marek Gierlinski ▴ 30
1
vote
7
replies
4.5k
views
Problems Installing biomaRt
biomaRt
updated 5 months ago by 65k • written 2.1 years ago by ▴ 20
3
votes
2
replies
422
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl biomaRt
5 months ago henrydionne ▴ 10
0
votes
3
replies
1.4k
views
getLDS causes "biomaRt has encountered an unexpected server error"
biomaRt
written 12 months ago by ▴ 30
0
votes
1
reply
966
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation biomaRt ensembldb
written 2.5 years ago by • 0
1
vote
5
replies
427
views
BiomaRt download data error
biomaRt
updated 12 weeks ago by ★ 6.5k • written 12 weeks ago by • 0
2
votes
2
replies
650
views
biomaRt error message: Error in textConnection(bmResult) : invalid 'text' argument
biomaRt
3 months ago bd2000 ▴ 30
0
votes
0
replies
381
views
Getting CDS 5'/CDS3' incomplete flags info from ENSEMBL using biomaRt
biomaRt
8 months ago ali.oghabian • 0
1
vote
2
replies
797
views
Error: biomaRt has encountered an unexpected server error.
biomaRt
updated 11 months ago by ★ 6.5k • written 11 months ago by • 0
1
vote
0
replies
208
views
News: Ensembl 111 has been released
Ensembl biomaRt
3 months ago Benjamin ▴ 30
0
votes
1
reply
1.5k
views
News: News:Ensembl 110 has been released
ensembldb biomaRt
updated 9 months ago by 41k • written 9 months ago by ▴ 30
0
votes
3
replies
469
views
determine if R package or it's dependencies functionality require internet access
biomaRt
updated 6 months ago by 50k • written 6 months ago by • 0
1
vote
1
reply
227
views
502 error biomaRt getLDS()
ensembldb biomaRt
updated 11 weeks ago by • 0 • written 12 weeks ago by ▴ 10
46 results • Page 1 of 1
Recent ...
Replies
Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
Awards • All
Popular Question to Gordon Smyth 50k
Popular Question to Zainab • 0
Popular Question to Theo ▴ 10
Popular Question to gene_bioconductor ▴ 10
Popular Question to rohitsatyam102 ▴ 20
Locations • All
France, just now
The city by the bay, 12 minutes ago
United States, 59 minutes ago
India, 1 hour ago
Ireland, 1 hour ago
Traffic: 657 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6