Showing : biobase • reset
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Beadarray error: comparison of types not implemented
Annotation ExperimentData Cancer Biobase beadarray Annotation ExperimentData Cancer
16.5 years ago Martin Morgan 25k
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0
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1.3k
views
affyPLM QC vignette is missing...
probe Biobase affy gcrma matchprobes affyPLM probe Biobase affy gcrma matchprobes
16.6 years ago Jenny Drnevich ★ 2.0k
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3
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2.3k
views
cannot access annotation from ExpressionSet in Bioc-Devel
Annotation GO Biobase limma Annotation GO Biobase limma
updated 16.6 years ago by ▴ 810 • written 16.6 years ago by ▴ 830
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2
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Can't load annotations with lumi
Microarray OneChannel Annotation Normalization probe Biobase annotate genefilter affy vsn
updated 16.9 years ago by ★ 1.2k • written 16.9 years ago by ▴ 280
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3
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1.3k
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Missing function locuslinkQuery and locuslinkBYID in annotate 1.18.0
GO hgu95av2 Biobase annotate GO hgu95av2 Biobase annotate
updated 17.0 years ago by ★ 7.2k • written 17.0 years ago by ▴ 300
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1
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1.0k
views
Missing function locuslinkQuery and locuslinkBYID in annotate 1.18.0
GO hgu95av2 Biobase annotate GO hgu95av2 Biobase annotate
updated 17.0 years ago by ★ 7.2k • written 17.0 years ago by ▴ 300
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2
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1.1k
views
Problem installing Biobase on Solaris
Biobase Biobase
updated 17.1 years ago by 16k • written 17.1 years ago by ▴ 200
0
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2
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3.1k
views
installing problem - preprocessCore, affy on linux platform
Biobase genefilter affy vsn gcrma matchprobes preprocessCore Biobase genefilter affy vsn
updated 17.1 years ago by ★ 6.5k • written 17.1 years ago by ▴ 20
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10
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2.1k
views
subset in XPS
Normalization Biobase xps Normalization Biobase xps
updated 17.3 years ago by ★ 3.9k • written 17.3 years ago by ▴ 80
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0
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1.4k
views
Problem with oneChannelGUI
GUI Biobase affy affyio oneChannelGUI preprocessCore GUI Biobase affy affyio
17.3 years ago Luc Vallieres ▴ 20
0
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0
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895
views
Possible Bug in readExpressionSet
Cancer Biobase Cancer Biobase
17.3 years ago Martin Morgan 25k
0
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0
replies
744
views
Problem viewing vignettes : openPDF and pdfviewer and possible fix
Cancer Biobase Cancer Biobase
17.3 years ago Martin Morgan 25k
0
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1
reply
1.7k
views
GSEABase error in parsing msigdb_v2.5.xml
GO Infrastructure hgu95av2 Biobase Ruuid AnnotationDbi GO Infrastructure hgu95av2 Biobase
updated 17.4 years ago by 25k • written 17.4 years ago by ▴ 130
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1
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1.2k
views
Input to vsn or limma of genepix file missing 635 columns
Annotation Normalization Biobase affy vsn limma marray convert Annotation Normalization
updated 17.4 years ago by ▴ 30 • written 17.4 years ago by 53k
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0
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963
views
ExpressionSet class and problems with phenotype and metadata matrices
Microarray Annotation Cancer hgu95av2 Biobase annotate affy Microarray Annotation Cancer
17.6 years ago Martin Morgan 25k
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0
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1.1k
views
custom subset method / handling columns selection as logic in '...' parameter
Cancer Biobase Cancer Biobase
17.8 years ago Martin Morgan 25k
0
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2
replies
1.5k
views
Rgraphviz edge attributes can't be changed on Mac
Biobase geneplotter Rgraphviz Biobase geneplotter Rgraphviz
updated 17.9 years ago by ▴ 540 • written 17.9 years ago by ★ 1.6k
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2
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1.2k
views
newbie Q about object identity
GUI Biobase genefilter GUI Biobase genefilter
updated 18.0 years ago by 25k • written 18.0 years ago by ▴ 20
0
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1
reply
1.4k
views
beadarray: combining several beadsummary data objects
Biobase geneplotter affy affyio beadarray Biobase geneplotter affy affyio beadarray
updated 18.0 years ago by ▴ 460 • written 18.0 years ago by ▴ 70
0
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2
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1.3k
views
gDNA Cy3, cDNA Cy5
Transcription Biobase annotate Transcription Biobase annotate
updated 18.0 years ago by ★ 13k • written 18.0 years ago by ▴ 270
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4
replies
1.1k
views
Problem with invalid GO term in HyperGResult object - NOT solved
GO Biobase GO Biobase
updated 18.0 years ago by 68k • written 18.0 years ago by 25k
0
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0
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1.0k
views
problem running dev version of GCRMA
hgu133plus2 cdf Biobase affy affyio hgu133plus2 cdf Biobase affy affyio
18.0 years ago Martin Morgan 25k
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1
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1.1k
views
Error in .nextMethod(e1, e2) working with R2.0. in Windows
Microarray Biobase Microarray Biobase
18.1 years ago Martin Morgan 25k
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0
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1.2k
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Does anyone have the same problem with new("ExpressionSet", ...) ?
Annotation Biobase Annotation Biobase
18.1 years ago Martin Morgan 25k
0
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0
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1.0k
views
Does anyone have the same problem with new("ExpressionSet", ...) ?
Annotation Biobase Annotation Biobase
18.1 years ago Wolfgang Huber ★ 13k
0
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0
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676
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Does anyone have the same problem with new("ExpressionSet", ...) ?
Cancer Biobase Cancer Biobase
18.1 years ago Seth Falcon ★ 7.4k
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0
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1.2k
views
Pulling significant gene ids from beadarray data
Biobase annotate affy affyio beadarray quantsmooth beadarraySNP lumi Biobase annotate
18.2 years ago Johnstone, Alice ▴ 410
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3
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1.6k
views
GDS2eSet problems
Biobase affy convert affyio GEOquery Biobase affy convert affyio GEOquery
18.2 years ago Mcmahon, Wyatt ▴ 50
0
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1
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3.9k
views
RE : create an new AnnotatedDataFrame
Annotation Survival Yeast Biobase genefilter tkWidgets marray convert arrayMagic affyio
updated 18.2 years ago by 25k • written 18.2 years ago by ▴ 30
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1
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2.1k
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create an new AnnotatedDataFrame
Survival Yeast Biobase genefilter tkWidgets marray convert arrayMagic affyio Survival
updated 18.2 years ago by 25k • written 18.2 years ago by ▴ 30
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3
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1.7k
views
GO terms not found in goTools and GO
GO Biobase annotate goTools biomaRt GO Biobase annotate goTools biomaRt
updated 18.2 years ago by ★ 7.4k • written 18.2 years ago by ▴ 80
0
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1
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1.6k
views
Imputation problem in aCGH
aCGH Biobase multtest impute aCGH aCGH Biobase multtest impute aCGH
18.2 years ago Benjamin Otto ▴ 830
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1
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1.7k
views
combineAffyBatch
hgu133a Biobase matchprobes hgu133a Biobase matchprobes
updated 18.3 years ago by 25k • written 18.3 years ago by ▴ 140
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1
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1.1k
views
hgu133a and gnGNF1Ba
Microarray Annotation hgu133a cdf Biobase affy PROcess Microarray Annotation hgu133a cdf
updated 18.3 years ago by ▴ 830 • written 18.3 years ago by ★ 3.4k
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1
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1.6k
views
snapCGH; export results of summarize.clones() function from aCGH
aCGH Survival Cancer Breast Biobase annotate genefilter geneplotter multtest limma aCGH
18.3 years ago Steven McKinney ▴ 310
0
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11
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2.4k
views
'recursive default argument' error in GOENTREZID2GO
GO Biobase genefilter graph Category GO Biobase genefilter graph Category
updated 18.3 years ago by ★ 7.4k • written 18.3 years ago by ▴ 260
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9
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2.5k
views
problem with duplicateCorrelation and ExpressionSet objects
GO Survival cdf Biobase graph limma gcrma annaffy affyPLM simpleaffy biomaRt Category
updated 18.4 years ago by ★ 7.4k • written 18.4 years ago by ★ 2.2k
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1
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1.2k
views
Problem with snprma
SNP Biobase oligo BufferedMatrix SNP Biobase oligo BufferedMatrix
updated 18.4 years ago by ★ 4.3k • written 18.4 years ago by ▴ 80
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2
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1.4k
views
help for siggene installation
Biobase multtest Biobase multtest
updated 18.4 years ago by ★ 7.4k • written 18.4 years ago by ▴ 60
0
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2
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1.4k
views
biomaRt, Error: ncol(result) == length(attributes) is not TRUE
Biobase annotate Rgraphviz biomaRt Biobase annotate Rgraphviz biomaRt
updated 18.5 years ago by ▴ 580 • written 18.5 years ago by ★ 1.4k
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0
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1.4k
views
marray and limma error with lmFit
Microarray Biobase DynDoc widgetTools limma arrayQuality marray convert Microarray DynDoc
18.5 years ago Paquet, Agnes ▴ 500
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0
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1.4k
views
RBGL: bfs & dfs with directed graphs
GO Biobase annotate geneplotter graph Rgraphviz annaffy RBGL convert GO Biobase graph
18.5 years ago stephen edwards ▴ 10
0
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3
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948
views
Limma: All probes come out as significant
Cancer Biobase limma Cancer Biobase limma
updated 18.5 years ago by 21k • written 18.5 years ago by ★ 1.9k
0
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1
reply
1.1k
views
Problems in AnnBuilder package function ABPkgBuilder
Annotation GO rat2302 probe Biobase annotate AnnBuilder PROcess Annotation GO rat2302
updated 18.5 years ago by ▴ 870 • written 18.5 years ago by ▴ 70
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1
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1.3k
views
topTable "resort.by" broken...
GO Survival Biobase annotate genefilter affy affydata graph gcrma matchprobes annaffy
updated 18.5 years ago by 53k • written 18.5 years ago by ★ 2.2k
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1
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1.6k
views
question about limma2annaffy
GO Survival Biobase annotate genefilter geneplotter affy affydata graph limma annaffy
updated 18.5 years ago by 68k • written 18.5 years ago by ★ 2.2k
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1
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1.1k
views
Normalization in davidTiling demo
Normalization GO Survival Biobase genefilter geneplotter affy vsn PROcess tilingArray GO
updated 18.6 years ago by ★ 13k • written 18.6 years ago by ★ 1.3k
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1
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1.3k
views
amigo links: gene ontology annotation for probes
Annotation GO Biobase annotate annaffy Annotation GO Biobase annotate annaffy
updated 18.6 years ago by ▴ 10 • written 18.6 years ago by ▴ 220
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2
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2.0k
views
can't load affycoretools because GOstats is broken. Can I load affycoretools without dependencies to use some functions?
GO Survival Biobase genefilter affy limma RBGL GOstats Category affyio affycoretools GO
18.7 years ago Mark W Kimpel ▴ 830
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1
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1.7k
views
beadarray and BeadStudio v.2.3.41
Biobase affy affyio beadarray Biobase affy affyio beadarray
updated 18.7 years ago by ▴ 320 • written 18.7 years ago by ▴ 70
288 results • Page 3 of 6
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Answer: How to model DE for RNA-seq in concordant monozygotic twins? by Gordon Smyth 53k
Your question is more about science than it is about software syntax, and I can't give advice about how to conduct a scientific analysis, n…
Comment: incomplete imputation of missing values with LEA impute() function by Gordon Smyth 53k
Nadia, please tag your question with the name of the package ("LEA") that you are asking about. "impute" is the name of a different Biocond…
Comment: Sharing a collection of datasets in ExperimentHub by Aaron Lun ★ 29k
FYI the **scRNAseq** packages uses a non-ExperimentHub storage platform, see [here](https://github.com/ArtifactDB/gypsum-worker) for more d…
Comment: Error Loading Experiment from SimBenchData Package by ATpoint ★ 4.9k
Is the Seurat package installed? The error somewhat suggests that it could be related, and at https://www.bioconductor.org/packages/release…
Answer: Help with defining groups by Gordon Smyth 53k
Defining sample groups is separate to reading in the DIA-NN data, because the sample conditions and covariates are not necessarily coded in…
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Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
Answer: ordinary t from limma [was: How would I normally compare swirl?]
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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