Showing : biobase • reset
0
votes
2
replies
1.7k
views
How to Represent Data from Various Different Assays in a Single Class?
biobase
updated 11.0 years ago by ★ 1.1k • written 11.0 years ago by ▴ 20
0
votes
3
replies
1.8k
views
conflict in names between phenoData and protocolData during RMA
biobase
11.1 years ago bin.shan • 0
0
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0
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1.8k
views
easyRNASeq: Number of total counts
GeneExpression RNASeq Genetics Coverage Normalization BSgenome Biobase Biostrings biomaRt
11.7 years ago Guest User ★ 13k
0
votes
2
replies
2.7k
views
make.cdf.package Error in copySubstitute
GO cdf Biobase affy GO cdf Biobase affy
updated 11.7 years ago by 68k • written 11.7 years ago by ▴ 30
0
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0
replies
1.0k
views
Problem with the oligo package for nimblegen analysis
Biobase Biobase
12.1 years ago William Oldham ▴ 10
0
votes
1
reply
2.1k
views
Coercing matrix into expression set, for normalization of only subsets of miRNAs (affy miRNA3.0)
miRNA Normalization GO Biobase affy convert oligo miRNA Normalization GO Biobase affy
updated 12.1 years ago by ▴ 190 • written 12.1 years ago by 68k
0
votes
2
replies
3.6k
views
Biobase - Error: ExpressionSet
Microarray Annotation GO ExperimentData Biobase Microarray Annotation GO ExperimentData
updated 12.1 years ago by 1.6k • written 12.1 years ago by ▴ 50
0
votes
5
replies
2.0k
views
multiple annotations with get()?
Biobase annotate convert Biobase annotate convert
updated 12.2 years ago by 21k • written 12.2 years ago by ▴ 230
0
votes
4
replies
22k
views
Unable to find an inherited method for function ‘exprs’
Biobase GEOquery virtualArray Biobase GEOquery virtualArray
updated 12.3 years ago by ★ 13k • written 12.3 years ago by ▴ 210
0
votes
2
replies
2.9k
views
[R] Select single probe-set with median expression from multiple probe-sets corresponding to same gene -AFFY
GO probe Biobase genefilter GO probe Biobase genefilter
updated 12.7 years ago by 25k • written 12.7 years ago by ▴ 30
0
votes
2
replies
3.0k
views
[R] Error in setMethod("combine"... was - Error when installing globaltest package
Infrastructure Cancer Biobase tkWidgets globaltest BiocInstaller BiocGenerics Cancer
updated 12.7 years ago by 25k • written 12.7 years ago by ▴ 40
0
votes
9
replies
1.6k
views
make check with Biobase 2.18.0
Biobase Biobase
updated 12.7 years ago by ★ 8.2k • written 12.7 years ago by ▴ 40
0
votes
2
replies
2.0k
views
GSEABase error parsing msigdb_v3.1.xml
GO Infrastructure hgu95av2 Biobase annotate graph Category AnnotationDbi BiocGenerics GO
updated 12.8 years ago by 25k • written 12.8 years ago by ▴ 80
0
votes
2
replies
1.9k
views
bioc data set not found
Biobase Biobase
updated 12.9 years ago by 68k • written 12.9 years ago by ▴ 680
0
votes
2
replies
1.4k
views
cummeRbund masks featureNames and samples from Biobase
Biobase cummeRbund Biobase cummeRbund
updated 12.9 years ago by 25k • written 12.9 years ago by ★ 13k
0
votes
4
replies
3.5k
views
Error : package slot missing from signature for generic
Biobase lumi oligoClasses Biobase lumi oligoClasses
13.3 years ago Mark Cowley ▴ 910
0
votes
1
reply
2.2k
views
GEOquery, GSEMatrix parameter and lifecycle of GEO series data
GO Biobase PROcess GEOquery GO Biobase PROcess GEOquery
updated 13.4 years ago by 21k • written 13.4 years ago by ▴ 440
0
votes
0
replies
1.4k
views
DESeq countDataSets and arrayQualityMetrics (was: Re: DESeq estimateDispersion options for lower depth miRNA-seq)
Genetics Biobase arrayQualityMetrics DESeq Genetics Biobase arrayQualityMetrics DESeq
13.7 years ago Wolfgang Huber ★ 13k
0
votes
1
reply
1.6k
views
FrozenRMA how to
Microarray Network hgu133plus2 Biobase PROcess KEGGSOAP beadarray EBImage edgeR frma
updated 13.8 years ago by ▴ 830 • written 13.8 years ago by ▴ 20
0
votes
0
replies
925
views
HTqPCR and Biobase's eSet
Biobase nudge HTqPCR Biobase nudge HTqPCR
14.0 years ago Heidi Dvinge ★ 2.0k
0
votes
1
reply
1.3k
views
HTqPCR and Biobase's eSet
Biobase HTqPCR Biobase HTqPCR
updated 14.0 years ago by ▴ 300 • written 14.0 years ago by ★ 2.3k
0
votes
1
reply
1.3k
views
Help on PLGEM R Package Data Import
Biobase plgem Biobase plgem
14.2 years ago Norman Pavelka ▴ 140
0
votes
0
replies
1.1k
views
Fwd: Help on PLGEM R Package Data Import
Biobase plgem Biobase plgem
14.2 years ago Norman Pavelka ▴ 140
0
votes
1
reply
1.5k
views
Biobase geneData, geneRecommender data object
Biobase geneRecommender Biobase geneRecommender
updated 14.4 years ago by ★ 13k • written 14.4 years ago by ▴ 10
0
votes
5
replies
2.8k
views
Unable to install packages
Biobase Biobase
updated 14.4 years ago by ▴ 50 • written 14.4 years ago by ▴ 30
0
votes
2
replies
1.0k
views
biobase
Biobase affy Biobase affy
updated 14.4 years ago by 25k • written 14.4 years ago by ▴ 10
0
votes
1
reply
1.2k
views
Installation of Bioconductor packages
Biobase Biobase
updated 14.5 years ago by 25k • written 14.5 years ago by ▴ 10
0
votes
6
replies
2.4k
views
iFlow/flowCore installation problem
Biobase flowCore iFlow Biobase flowCore iFlow
updated 14.7 years ago by ★ 8.2k • written 14.7 years ago by ▴ 60
0
votes
2
replies
1.2k
views
openVignette(Biobase) and citation(Biobase) give errors after installing Biobase
Biobase Biobase
updated 14.7 years ago by ★ 8.2k • written 14.7 years ago by ▴ 50
0
votes
0
replies
695
views
Question about
Biobase GEOquery Biobase GEOquery
14.8 years ago Sean Davis 21k
0
votes
2
replies
1.0k
views
AnnotatedDataFrame and cbind
Biobase Biobase
updated 15.1 years ago by 6.7k • written 15.1 years ago by ★ 3.8k
0
votes
1
reply
1.6k
views
Biobase in R 2.12 referencing libR.dylib from R 2.11, bug?
Cancer Biobase Cancer Biobase
updated 15.1 years ago by 16k • written 15.1 years ago by ▴ 140
0
votes
1
reply
1.1k
views
dynamic range/scale using exprs (Biobase)
Biobase affy Biobase affy
updated 15.3 years ago by ★ 2.3k • written 15.3 years ago by ▴ 330
0
votes
1
reply
2.5k
views
Example on constructing AffyBatch object
Biobase affydata Biobase affydata
updated 15.4 years ago by 68k • written 15.4 years ago by ▴ 950
0
votes
1
reply
954
views
FW: SetMethod for Combine
Biobase Biobase
updated 15.5 years ago by 25k • written 15.5 years ago by ▴ 30
0
votes
3
replies
1.6k
views
oligo package cannot read files when gdata is loaded
Biobase oligo Biobase oligo
15.8 years ago Benilton Carvalho ★ 4.3k
0
votes
3
replies
1.7k
views
GOHyperGResult in a data.frame, possible NAMESPACE problem?
GO Biobase annotate PROcess GOstats Category AnnotationDbi GO Biobase annotate PROcess
updated 15.9 years ago by ★ 7.4k • written 15.9 years ago by ★ 3.4k
0
votes
0
replies
896
views
error with getGEO;ask for help
Biobase GEOquery Biobase GEOquery
16.0 years ago Sean Davis 21k
0
votes
5
replies
3.8k
views
Error in .local(.Object, ...) : could not find function "checkClass"
Biobase Biobase
updated 16.0 years ago by 25k • written 16.0 years ago by ▴ 80
0
votes
1
reply
1.5k
views
(no subject)
Biobase GEOquery Biobase GEOquery
updated 16.0 years ago by ▴ 150 • written 16.0 years ago by ▴ 30
0
votes
1
reply
1.8k
views
Bioconductor installation for SUSE 11.1
Biobase GEOquery Biobase GEOquery
updated 16.0 years ago by 21k • written 16.0 years ago by ▴ 30
0
votes
4
replies
2.8k
views
Installing affy package
Biobase affy Biobase affy
updated 16.0 years ago by ▴ 450 • written 16.0 years ago by ▴ 140
0
votes
3
replies
1.8k
views
Supressing welcome to bioconductor message?
Biobase Biobase
updated 16.1 years ago by 21k • written 16.1 years ago by ★ 3.9k
0
votes
7
replies
2.6k
views
S4 object??
Biobase limma Biobase limma
updated 16.1 years ago by 68k • written 16.1 years ago by ▴ 40
0
votes
1
reply
1.2k
views
multiple Affy normalization results in single object ?
Biobase vsn Biobase vsn
updated 16.3 years ago by 25k • written 16.3 years ago by ▴ 140
0
votes
7
replies
1.8k
views
Changes in annotations?
Annotation hgu133plus2 Biobase annotate Annotation hgu133plus2 Biobase annotate
16.4 years ago Alex Sanchez ▴ 90
0
votes
1
reply
4.1k
views
limma and ebayes : error message : differences in versions?
Biobase limma Biobase limma
updated 16.5 years ago by 68k • written 16.5 years ago by ▴ 40
0
votes
1
reply
1.9k
views
IQR implementation in varFiler and nsFilter (genefilter package)
Biobase genefilter Biobase genefilter
updated 16.5 years ago by ★ 1.6k • written 16.6 years ago by ▴ 610
0
votes
3
replies
1.5k
views
problem with biocLite("Biobase") -- results in looping of download
Cancer Biobase Cancer Biobase
updated 16.5 years ago by ▴ 830 • written 16.6 years ago by 25k
0
votes
0
replies
1.1k
views
problem with biocLite("Biobase") -- results in looping of download
Biobase Biobase
16.6 years ago Mark W Kimpel ▴ 830
288 results • Page 2 of 6
Recent ...
Replies
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Comment: problem reading bam files into nucleR by efoss ▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma by Gordon Smyth 53k
Answered here: https://support.bioconductor.org/p/16318/
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much! will take that into consideration
Votes
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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Popular Question to Hervé Pagès 16k
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