Showing : biocViews • reset
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qvalues installation
biocViews
4.9 years ago jdorgan • 0
0
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2
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1.6k
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Error in DESeq2 Unmix() function: L-BFGS-B needs finite values of 'fn'
deseq2 biocViews
7.6 years ago • updated 14 months ago JennyS • 0
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1.6k
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Question about sumbition process and biocviews
biocviews biocparallel github package submission
updated 9.2 years ago by 25k • written 9.2 years ago by ▴ 30
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1
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1.4k
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How to suggest BiocViews tags for an existing package?
biocviews champ
10.4 years ago Peter Hickey ▴ 760
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2
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4.5k
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Bioconductor 2.12 is released
BiocViews aCGH SNP Transcription Sequencing Microarray Coverage Alignment Annotation GO
updated 10.5 years ago by • 0 • written 12.8 years ago by ★ 8.2k
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2
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2.3k
views
pdInfoBuilder fails on Affy's GeneChip Human Transcriptome Array 2.0
BiocViews Annotation Organism biocViews oligo oligoClasses BiocViews BiocViews Annotation
updated 10.7 years ago by ▴ 20 • written 12.0 years ago by ▴ 40
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3
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3.1k
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Probeset/Transcript cluster definitions for HTA2.0 using pdInfoBuilder
BiocViews Annotation Organism biocViews pdInfoBuilder BiocViews BiocViews Annotation
updated 11.4 years ago by 68k • written 11.4 years ago by ▴ 40
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2.6k
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Affymetrix HTA 2 array analysis
BiocViews Annotation Cancer Breast Organism PROcess biocViews pdInfoBuilder BiocViews
11.8 years ago Elena Serrano ▴ 30
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4.6k
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Bioconductor 2.14 is released
BiocViews aCGH SNP Sequencing RNASeq ChIPSeq miRNA Microarray qPCR Metabolomics Coverage
11.8 years ago Dan Tenenbaum ★ 8.2k
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0
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3.8k
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Affymetrix HTA 2 array analysis
BiocViews Annotation Cancer Breast Organism PROcess biocViews pdInfoBuilder BiocViews
12.0 years ago Elena Serrano ▴ 30
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5
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2.6k
views
Complete variant toolbox: gmapR/VariantTools/VariantAnnotation
BiocViews VariantAnnotation Annotation biocViews Rsubread VariantAnnotation gmapR BiocViews
12.1 years ago Thomas Girke ★ 1.7k
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1
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2.5k
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Affymetrix HTA 2 array analysis
BiocViews Annotation Cancer Breast Organism PROcess biocViews pdInfoBuilder BiocViews
updated 12.2 years ago by ★ 4.3k • written 12.2 years ago by ▴ 290
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0
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4.8k
views
Bioconductor 2.13 is released
BiocViews aCGH SNP Transcription Sequencing miRNA Microarray Genetics Proteomics Coverage
12.3 years ago Dan Tenenbaum ★ 8.2k
2
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4
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3.3k
views
makePdInfoPackage for Primeview arrays
BiocViews Annotation Cancer Organism cdf probe affy biocViews BiocViews BiocViews Cancer
updated 12.6 years ago by ★ 3.9k • written 12.6 years ago by ▴ 140
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4
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2.1k
views
Passing multiple files to pdInfobuilder
BiocViews biocViews pdInfoBuilder BiocViews BiocViews biocViews pdInfoBuilder
updated 13.2 years ago by ▴ 50 • written 13.2 years ago by ★ 13k
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0
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3.6k
views
Bioconductor 2.11 is released
BiocViews SNP Transcription Sequencing miRNA Microbiome Microarray qPCR Genetics Coverage
13.3 years ago Dan Tenenbaum ★ 8.2k
0
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1
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1.7k
views
AnnotationDbi: NewSchema vignette error
BiocViews miRNA Annotation Cancer Organism biocViews AnnotationDbi BiocViews BiocViews
updated 13.6 years ago by ★ 7.2k • written 13.6 years ago by ▴ 910
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1.6k
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Nimblegen promoter medip array platform design file problem
BiocViews Annotation Organism biocViews pdInfoBuilder charm BiocViews BiocViews Annotation
13.8 years ago zeynep özkeserli ▴ 160
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1.6k
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Nimblegen promoter medip array platform design file problem
BiocViews Annotation Organism biocViews pdInfoBuilder charm BiocViews BiocViews Annotation
13.8 years ago zeynep özkeserli ▴ 160
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2
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1.8k
views
oligo package: extracting position, sequence, and intensity from Affymetrix tiling array
BiocViews Organism biocViews oligo pdInfoBuilder BiocViews BiocViews Organism biocViews
updated 13.8 years ago by ★ 4.3k • written 13.8 years ago by ★ 13k
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0
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1.2k
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makeOrgPackageFromNCBI another error - reversed commands
BiocViews GO Organism ChipName biocViews BiocViews BiocViews GO Organism ChipName
13.9 years ago Guest User ★ 13k
0
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1
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1.7k
views
makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : , bind.data must have non-zero dimensions
BiocViews Annotation Organism biocViews BiocViews BiocViews Annotation Organism biocViews
updated 13.9 years ago by ★ 4.3k • written 13.9 years ago by ▴ 20
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0
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1.9k
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Using pdInfoBuilder for Human Exon Array
BiocViews Annotation Organism cdf biocViews oligo pdInfoBuilder BiocViews BiocViews cdf
14.6 years ago Maria Rodrigo-Domingo / Region Nordjyll… ▴ 10
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4
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5.0k
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An error in oligo: All the CEL files must be of the same type??
BiocViews Annotation Organism biocViews oligo BiocViews BiocViews Annotation Organism
updated 14.6 years ago by ★ 4.3k • written 14.6 years ago by ▴ 20
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0
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1.7k
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Bioconductor 2.7 is released
BiocViews aCGH Transcription RNASeq miRNA Microarray Normalization Network Bayesian aCGH
15.3 years ago Martin Morgan 25k
0
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1
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1.8k
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error fix.by(by.x, x) in Pdinfobuilder package
BiocViews Microarray Annotation Organism biocViews BiocViews BiocViews Microarray Organism
updated 15.3 years ago by ★ 4.3k • written 15.3 years ago by ▴ 60
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0
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1.6k
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Building AnnotationDbi Packages - Problems when using makeAnnDbPkg
BiocViews Genetics Annotation GO Organism probe biocViews AnnotationDbi BiocViews GO
15.7 years ago Marc Carlson ★ 7.2k
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1.3k
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Building AnnotationDbi Packages - Problems when using makeAnnDbPkg
BiocViews Genetics Annotation GO Organism biocViews AnnotationDbi BiocViews BiocViews GO
15.7 years ago Julian Lee ▴ 10
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1
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2.0k
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Affy Gene ST arrays with "oligo"
BiocViews Annotation Organism affy PROcess biocViews BiocViews BiocViews Annotation affy
updated 16.6 years ago by ★ 3.9k • written 16.6 years ago by ▴ 830
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1
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1.3k
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error while using oligo to build a custom affy cdf
BiocViews cdf affy biocViews BiocViews BiocViews cdf affy biocViews
updated 17.3 years ago by 68k • written 17.3 years ago by ▴ 830
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3
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1.7k
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inquiry for CDF file
BiocViews biocViews pdInfoBuilder BiocViews BiocViews biocViews pdInfoBuilder
17.3 years ago Rob Dunne ▴ 230
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0
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1.6k
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Sc03b_MR_v04 CDF package
BiocViews Genetics Yeast cdf probe affy affxparser biocViews oligo pdInfoBuilder Yeast
17.4 years ago Ludo Muller ▴ 50
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0
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1.5k
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confusion about nomenclature of illumina annotationpackages
BiocViews Annotation Cancer Mus musculus illuminaHumanv1 illuminaHumanv2 probe annotate
17.5 years ago Lynn Amon ▴ 280
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1
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2.2k
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confusion about nomenclature of illumina annotation packages
BiocViews annotate biocViews BiocViews BiocViews annotate biocViews
updated 17.5 years ago by ▴ 280 • written 17.5 years ago by ▴ 130
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3
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2.0k
views
pd.mapping 10Karray
BiocViews cdf affyio biocViews oligo pdInfoBuilder BufferedMatrix BiocViews BiocViews cdf
updated 18.4 years ago by ★ 7.4k • written 18.5 years ago by ▴ 10
0
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0
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1.6k
views
BioC 1.9 is released!
BiocViews SNP Microarray Annotation Normalization Visualization Network Infrastructure SNP
19.3 years ago Seth Falcon ★ 7.4k
0
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1
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1.2k
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getting a list of packages by biocView tags
BiocViews biocViews BiocViews BiocViews biocViews
updated 19.7 years ago by ★ 7.4k • written 19.7 years ago by ▴ 50
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0
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1.7k
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Bioconductor 1.8 for R 2.3.0 is released!
BiocViews aCGH SNP Microarray Annotation GO Clustering Cancer Yeast cdf probe RMAGEML
19.8 years ago Seth Falcon ★ 7.4k
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Comment: Bile acid analysis with limpa by ATpoint ★ 5.0k
Wilcox/Mann-Whitney-U cannot work because it is bound to sample size even when all of group X are lower than all of group Y. At 4 vs 3 the …
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I could install ChemmineOB on my MacBook Pro M1 Max using this procedure **1. Install open-babel and eigen using homebrew and create a cus…
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The design matrix that I described above is completely general. I imagine that it would be possible to use the same approach to generate fu…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0
Cool, glad to hear I wasn't missing some functionality in DESeq2. I don't know that much about the differences between DESeq2 vs edgeR; my …
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k
Yes, so for one thing, note that Gordon has provided code for doing what you are asking in edgeR, which you can go ahead and use. You aske…
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Answer: When to use edgeR or limma
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