Showing : biomaRT • reset
0
votes
3
replies
160
views
Error retrieving ensembl gene id using biomaRt...
biomaRt
updated 20 days ago by 65k • written 20 days ago by ▴ 30
2
votes
2
replies
196
views
OrgDb for maize
clusterProfiler OrgDb biomaRt Zea_mays
updated 20 days ago by 65k • written 21 days ago by • 0
0
votes
1
reply
151
views
Multiple affymatrix IDs mapping to a single gene name
biomaRt
updated 5 weeks ago by 65k • written 5 weeks ago by • 0
0
votes
1
reply
304
views
error in mapIds function
mapIds biomaRt
updated 10 weeks ago by 690 • written 10 weeks ago by • 0
0
votes
2
replies
469
views
Issue with BiomaRt's getLDS: Query ERROR: caught BioMart::Exception::Query: returning undef ... missing attributes for your exportable
biomaRt
12 weeks ago eefernan5 • 0
3
votes
3
replies
9.4k
views
How to find rsID with biomaRt in R
biomaRt
updated 3 months ago by 65k • written 3.2 years ago by ▴ 10
1
vote
1
reply
233
views
502 error biomaRt getLDS()
ensembldb biomaRt
updated 12 weeks ago by • 0 • written 3 months ago by ▴ 10
0
votes
1
reply
226
views
biomaRt issue
biomaRt
updated 3 months ago by ★ 6.5k • written 3 months ago by • 0
1
vote
5
replies
449
views
BiomaRt download data error
biomaRt
updated 3 months ago by ★ 6.5k • written 3 months ago by • 0
6
votes
9
replies
797
views
biomaRt has encountered an unknown server error.
biomaRt host useEnsembl
updated 3 months ago by • 0 • written 3 months ago by • 0
1
vote
1
reply
429
views
Error with biomaRt
biomaRt
updated 3 months ago by ★ 6.5k • written 3 months ago by • 0
4
votes
2
replies
372
views
Enrichement with clusterProfiler and biomart
biomaRt clusterProfiler Zea_mays
updated 3 months ago by ★ 3.9k • written 3 months ago by • 0
2
votes
2
replies
665
views
biomaRt error message: Error in textConnection(bmResult) : invalid 'text' argument
biomaRt
3 months ago bd2000 ▴ 30
1
vote
0
replies
220
views
News: Ensembl 111 has been released
Ensembl biomaRt
3 months ago Benjamin ▴ 30
0
votes
2
replies
406
views
Problem with loading ensembl version 105.
biomaRt
4 months ago RC • 0
0
votes
1
reply
729
views
biomaRt_getBM_Failed to collect lazy table
getBM biomaRt
updated 5 months ago by 65k • written 5 months ago by • 0
0
votes
3
replies
395
views
Obtaining rsIDs with ENSG and variant ID information
rsid biomaRt
updated 5 months ago by ★ 3.3k • written 5 months ago by ▴ 30
4
votes
12
replies
988
views
Ensembl down???
biomaRt
5 months ago bas_work ▴ 30
3
votes
2
replies
432
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl biomaRt
5 months ago henrydionne ▴ 10
1
vote
2
replies
680
views
How to find stop codons for a list of genes
stopcodon biomaRt
5 months ago Marek Gierlinski ▴ 30
0
votes
10
replies
827
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R BioMart biomaRt
5 months ago • updated 9 weeks ago ScafioRuo • 0
10
votes
10
replies
7.1k
views
biomaRt not working - lazy table error
error lazy R biomaRt table
updated 7 weeks ago by • 0 • written 6 months ago by ▴ 10
0
votes
3
replies
474
views
determine if R package or it's dependencies functionality require internet access
biomaRt
updated 6 months ago by 50k • written 6 months ago by • 0
1
vote
4
replies
680
views
biomaRt code/getBM function no longer importing 'coding' sequence via seqType argument, "Invalid attribute(s): coding" error
biomaRt
7 months ago andrew.b.kleist ▴ 10
7
votes
6
replies
4.2k
views
Conversion of UniProt to Ensembl
biomaRt ensembldb UniProt.ws
updated 7 months ago by 690 • written 21 months ago by ▴ 20
0
votes
2
replies
371
views
Biomart - upstream region of 'coding'
biomaRt
updated 8 months ago by ★ 6.5k • written 8 months ago by ▴ 20
0
votes
0
replies
385
views
Getting CDS 5'/CDS3' incomplete flags info from ENSEMBL using biomaRt
biomaRt
8 months ago ali.oghabian • 0
1
vote
5
replies
614
views
Errors with makeTxDbFromBiomart
biomaRt
updated 8 months ago by 65k • written 8 months ago by ▴ 10
3
votes
2
replies
1.1k
views
ERROR in EnrichKEGG(), 'species should be listed' in, download method do not change
KEGG DESeq2 biomaRt clusterProfiler org.Mm.eg.db
updated 8 months ago by ★ 3.9k • written 8 months ago by ▴ 10
0
votes
3
replies
789
views
Error with makeTxDbFromBiomart
DEXSeq biomaRt
updated 9 months ago by 16k • written 9 months ago by • 0
1
vote
2
replies
616
views
biomaRt not retrieving complete list of functional consequences associated with list of SNPs
ensembl R biomaRt
9 months ago Miguel • 0
0
votes
1
reply
629
views
Trouble using biomaRt to pull pathway genes from GO
GO biomaRt
updated 9 months ago by 65k • written 9 months ago by • 0
0
votes
1
reply
1.5k
views
News: News:Ensembl 110 has been released
ensembldb biomaRt
updated 9 months ago by 42k • written 9 months ago by ▴ 30
0
votes
1
reply
837
views
multiple filters in biomaRt
biomaRt
updated 11 months ago by ▴ 10 • written 11 months ago by • 0
2
votes
4
replies
955
views
Use with_go along with other filters in getBM function
Annotation biomaRt
11 months ago RuBBiT0 ▴ 10
1
vote
2
replies
807
views
Error: biomaRt has encountered an unexpected server error.
biomaRt
updated 11 months ago by ★ 6.5k • written 11 months ago by • 0
0
votes
3
replies
1.4k
views
getLDS causes "biomaRt has encountered an unexpected server error"
biomaRt
written 12 months ago by ▴ 30
0
votes
3
replies
1.0k
views
Problem installing biomaRt on mac
biomaRt mac
updated 9 months ago by ▴ 50 • written 18 months ago by • 0
7
votes
5
replies
7.0k
views
biomaRt server error, and mirrors do not help
ensembl biomaRt R
updated 7 months ago by • 0 • written 2.0 years ago by ▴ 40
22
votes
15
replies
7.5k
views
biomaRt error unable to fix: need help troubleshooting
biomaRt RNASeqData R
updated 6 months ago by ▴ 10 • written 2.1 years ago by ▴ 50
1
vote
7
replies
4.5k
views
Problems Installing biomaRt
biomaRt
updated 5 months ago by 65k • written 2.1 years ago by ▴ 20
0
votes
1
reply
973
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation biomaRt ensembldb
written 2.5 years ago by • 0
4
votes
4
replies
1.7k
views
biomaRt error: database disk image is malformed
biomaRt
updated 11 months ago by • 0 • written 2.6 years ago by ▴ 10
5
votes
4
replies
9.8k
views
Getting rs ids using chr coordinates | Biomart
SNP rs id Biomart Chromosome coordinates
updated 10 months ago by 65k • written 3.7 years ago by • 0
1
vote
4
replies
1.1k
views
Issue with Biomart- cannot access ensembl
biomaRT
updated 7 weeks ago by 65k • written 4.1 years ago by • 0
0
votes
2
replies
702
views
biomart not ound some prevous release
biomart rnaseq
written 5.2 years ago by ▴ 40
46 results • Page 1 of 1
Recent ...
Replies
Comment: deseq2 results by sajadahmad41454 • 0
thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.
Comment: deseq2 results by swbarnes2 ★ 1.4k
It looks like the PCA plot of a real RNASeq experiment. The red outlier on the left might be the mathematical reason why you have few vali…
Comment: Multi-factorial, longitudinal disease progression analysis with unbalanced patie by Dylan.Sheerin • 0
Thank you very much, Gordon. I'll give voomLmFit a go!
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie by Gordon Smyth 50k
Including subjectID in the design matrix always accounts for unbalanced sampling and patient variation but subjects with incomplete records…
Comment: Log-cpm values from limma by Gordon Smyth 50k
No, it does not mean that. `voom()` uses the design matrix with the W covariates, to compute precision weights but not to adjust the log-cp…
Votes
Comment: deseq2 results
Comment: deseq2 results
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
Answer: Extremely small p-values using Limma for proteomic data
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