Showing : biomaRt • reset
1
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0
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24
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News: Ensembl 112 has been released.
ensembldb biomaRt ensemblrelease
10 hours ago Aleena ▴ 30
0
votes
3
replies
168
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Error retrieving ensembl gene id using biomaRt...
biomaRt
updated 25 days ago by 65k • written 25 days ago by ▴ 30
2
votes
2
replies
205
views
OrgDb for maize
clusterProfiler OrgDb biomaRt Zea_mays
updated 25 days ago by 65k • written 25 days ago by • 0
0
votes
1
reply
156
views
Multiple affymatrix IDs mapping to a single gene name
biomaRt
updated 6 weeks ago by 65k • written 6 weeks ago by • 0
0
votes
2
replies
708
views
biomart not ound some prevous release
biomart rnaseq
written 5.2 years ago by ▴ 40
1
vote
4
replies
1.2k
views
Issue with Biomart- cannot access ensembl
biomaRT
updated 7 weeks ago by 65k • written 4.1 years ago by • 0
10
votes
10
replies
7.2k
views
biomaRt not working - lazy table error
error lazy R biomaRt table
updated 7 weeks ago by • 0 • written 6 months ago by ▴ 10
0
votes
10
replies
839
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R BioMart biomaRt
5 months ago • updated 10 weeks ago ScafioRuo • 0
0
votes
1
reply
313
views
error in mapIds function
mapIds biomaRt
updated 11 weeks ago by 690 • written 11 weeks ago by • 0
0
votes
2
replies
478
views
Issue with BiomaRt's getLDS: Query ERROR: caught BioMart::Exception::Query: returning undef ... missing attributes for your exportable
biomaRt
3 months ago • updated 12 weeks ago eefernan5 • 0
1
vote
1
reply
238
views
502 error biomaRt getLDS()
ensembldb biomaRt
updated 3 months ago by • 0 • written 3 months ago by ▴ 10
3
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3
replies
9.5k
views
How to find rsID with biomaRt in R
biomaRt
updated 3 months ago by 65k • written 3.2 years ago by ▴ 10
0
votes
1
reply
231
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biomaRt issue
biomaRt
updated 3 months ago by ★ 6.5k • written 3 months ago by • 0
1
vote
5
replies
463
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BiomaRt download data error
biomaRt
updated 3 months ago by ★ 6.5k • written 3 months ago by • 0
6
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9
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842
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biomaRt has encountered an unknown server error.
biomaRt host useEnsembl
updated 3 months ago by • 0 • written 3 months ago by • 0
1
vote
1
reply
446
views
Error with biomaRt
biomaRt
updated 3 months ago by ★ 6.5k • written 3 months ago by • 0
4
votes
2
replies
376
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Enrichement with clusterProfiler and biomart
biomaRt clusterProfiler Zea_mays
updated 3 months ago by ★ 3.9k • written 3 months ago by • 0
2
votes
2
replies
671
views
biomaRt error message: Error in textConnection(bmResult) : invalid 'text' argument
biomaRt
4 months ago • updated 3 months ago bd2000 ▴ 30
1
vote
0
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229
views
News: Ensembl 111 has been released
Ensembl biomaRt
4 months ago Benjamin ▴ 30
0
votes
2
replies
413
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Problem with loading ensembl version 105.
biomaRt
4 months ago RC • 0
0
votes
1
reply
744
views
biomaRt_getBM_Failed to collect lazy table
getBM biomaRt
updated 5 months ago by 65k • written 5 months ago by • 0
4
votes
12
replies
996
views
Ensembl down???
biomaRt
5 months ago bas_work ▴ 30
0
votes
3
replies
410
views
Obtaining rsIDs with ENSG and variant ID information
rsid biomaRt
updated 5 months ago by ★ 3.3k • written 5 months ago by ▴ 30
3
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2
replies
438
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl biomaRt
5 months ago henrydionne ▴ 10
0
votes
1
reply
979
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation biomaRt ensembldb
written 2.5 years ago by • 0
1
vote
2
replies
687
views
How to find stop codons for a list of genes
stopcodon biomaRt
5 months ago Marek Gierlinski ▴ 30
1
vote
7
replies
4.5k
views
Problems Installing biomaRt
biomaRt
updated 6 months ago by 65k • written 2.1 years ago by ▴ 20
22
votes
15
replies
7.5k
views
biomaRt error unable to fix: need help troubleshooting
biomaRt RNASeqData R
updated 6 months ago by ▴ 10 • written 2.1 years ago by ▴ 50
0
votes
3
replies
484
views
determine if R package or it's dependencies functionality require internet access
biomaRt
updated 6 months ago by 50k • written 6 months ago by • 0
0
votes
3
replies
1.4k
views
getLDS causes "biomaRt has encountered an unexpected server error"
biomaRt
written 13 months ago by ▴ 30
7
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5
replies
7.0k
views
biomaRt server error, and mirrors do not help
ensembl biomaRt R
updated 7 months ago by • 0 • written 2.0 years ago by ▴ 40
7
votes
6
replies
4.2k
views
Conversion of UniProt to Ensembl
biomaRt ensembldb UniProt.ws
updated 7 months ago by 690 • written 21 months ago by ▴ 20
1
vote
4
replies
686
views
biomaRt code/getBM function no longer importing 'coding' sequence via seqType argument, "Invalid attribute(s): coding" error
biomaRt
7 months ago andrew.b.kleist ▴ 10
0
votes
2
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375
views
Biomart - upstream region of 'coding'
biomaRt
updated 8 months ago by ★ 6.5k • written 8 months ago by ▴ 20
0
votes
0
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390
views
Getting CDS 5'/CDS3' incomplete flags info from ENSEMBL using biomaRt
biomaRt
8 months ago ali.oghabian • 0
1
vote
5
replies
615
views
Errors with makeTxDbFromBiomart
biomaRt
updated 9 months ago by 65k • written 9 months ago by ▴ 10
3
votes
2
replies
1.1k
views
ERROR in EnrichKEGG(), 'species should be listed' in, download method do not change
KEGG DESeq2 biomaRt clusterProfiler org.Mm.eg.db
updated 9 months ago by ★ 3.9k • written 9 months ago by ▴ 10
0
votes
3
replies
1.0k
views
Problem installing biomaRt on mac
biomaRt mac
updated 9 months ago by ▴ 50 • written 18 months ago by • 0
0
votes
3
replies
799
views
Error with makeTxDbFromBiomart
DEXSeq biomaRt
updated 9 months ago by 16k • written 9 months ago by • 0
1
vote
2
replies
624
views
biomaRt not retrieving complete list of functional consequences associated with list of SNPs
ensembl R biomaRt
9 months ago Miguel • 0
0
votes
1
reply
1.5k
views
News: News:Ensembl 110 has been released
ensembldb biomaRt
updated 9 months ago by 42k • written 10 months ago by ▴ 30
0
votes
1
reply
631
views
Trouble using biomaRt to pull pathway genes from GO
GO biomaRt
updated 9 months ago by 65k • written 9 months ago by • 0
5
votes
4
replies
9.8k
views
Getting rs ids using chr coordinates | Biomart
SNP rs id Biomart Chromosome coordinates
updated 10 months ago by 65k • written 3.8 years ago by • 0
0
votes
1
reply
840
views
multiple filters in biomaRt
biomaRt
updated 11 months ago by ▴ 10 • written 11 months ago by • 0
2
votes
4
replies
961
views
Use with_go along with other filters in getBM function
Annotation biomaRt
11 months ago RuBBiT0 ▴ 10
1
vote
2
replies
814
views
Error: biomaRt has encountered an unexpected server error.
biomaRt
updated 11 months ago by ★ 6.5k • written 11 months ago by • 0
4
votes
4
replies
1.8k
views
biomaRt error: database disk image is malformed
biomaRt
updated 11 months ago by • 0 • written 2.6 years ago by ▴ 10
47 results • Page 1 of 1
Recent ...
Replies
Answer: Assymetric MA plot with no overall trend by Michael Love 42k
> so many upregulated genes vs. downregulated, which I think is worrying Take a look at the plotCounts for a couple of the up-regulated …
Comment: Can I trust the differential expression analysis when the two groups overlap on by Michael Love 42k
I'm wondering about sample table mixup. How have you merged your sequencing data with the phenotype data (`colData`)?
Comment: Can I trust the differential expression analysis when the two groups overlap on by Eric Katagirya • 0
Thanks @mikelove , Using vst or rlog doesn't improve the segregation nor is there a remarkable difference when I use 1000 or 2000 most vari…
Answer: Batch effect correction: methylome data by zhouwanding ▴ 10
I agree that the batch variable should be better modeled as a co-variate than explicit batch correction. There is also RUVm (https://www.nc…
Comment: Can I trust the differential expression analysis when the two groups overlap on by Eric Katagirya • 0
Thanks @bioinfguru - I did the 3-D PCA plot ![PC1 vs PC3 plot][1] and also the scree plot ![Scree plot][2] but couldn't make much of the…
Votes
Ensembl 112 has been released.
A: Diffbind results - non uniform width
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Answer: Error EPICv2 ChAMP
Comment: Store output of matchPWM()
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