Showing : biomart • reset
0
votes
3
replies
53
views
Error retrieving ensembl gene id using biomaRt...
biomaRt
updated 15 hours ago by 65k • written 17 hours ago by ▴ 30
1
vote
2
replies
72
views
OrgDb for maize
clusterProfiler OrgDb biomaRt Zea_mays
updated 17 hours ago by 65k • written 1 day ago by • 0
0
votes
1
reply
112
views
Multiple affymatrix IDs mapping to a single gene name
biomaRt
updated 17 days ago by 65k • written 17 days ago by • 0
0
votes
1
reply
251
views
error in mapIds function
mapIds biomaRt
updated 7 weeks ago by 690 • written 7 weeks ago by • 0
0
votes
2
replies
433
views
Issue with BiomaRt's getLDS: Query ERROR: caught BioMart::Exception::Query: returning undef ... missing attributes for your exportable
biomaRt
9 weeks ago eefernan5 • 0
3
votes
3
replies
9.2k
views
How to find rsID with biomaRt in R
biomaRt
updated 10 weeks ago by 65k • written 3.1 years ago by ▴ 10
1
vote
1
reply
205
views
502 error biomaRt getLDS()
ensembldb biomaRt
updated 9 weeks ago by • 0 • written 10 weeks ago by ▴ 10
0
votes
1
reply
202
views
biomaRt issue
biomaRt
updated 10 weeks ago by ★ 6.5k • written 10 weeks ago by • 0
1
vote
5
replies
378
views
BiomaRt download data error
biomaRt
updated 10 weeks ago by ★ 6.5k • written 10 weeks ago by • 0
6
votes
9
replies
690
views
biomaRt has encountered an unknown server error.
biomaRt host useEnsembl
updated 11 weeks ago by • 0 • written 11 weeks ago by • 0
1
vote
1
reply
338
views
Error with biomaRt
biomaRt
updated 3 months ago by ★ 6.5k • written 3 months ago by • 0
4
votes
2
replies
334
views
Enrichement with clusterProfiler and biomart
biomaRt clusterProfiler Zea_mays
updated 3 months ago by ★ 3.9k • written 3 months ago by • 0
2
votes
2
replies
591
views
biomaRt error message: Error in textConnection(bmResult) : invalid 'text' argument
biomaRt
3 months ago bd2000 ▴ 30
1
vote
0
replies
177
views
News: Ensembl 111 has been released
Ensembl biomaRt
3 months ago Benjamin ▴ 30
0
votes
2
replies
359
views
Problem with loading ensembl version 105.
biomaRt
3 months ago RC • 0
0
votes
1
reply
645
views
biomaRt_getBM_Failed to collect lazy table
getBM biomaRt
updated 4 months ago by 65k • written 4 months ago by • 0
0
votes
3
replies
351
views
Obtaining rsIDs with ENSG and variant ID information
rsid biomaRt
updated 4 months ago by ★ 3.2k • written 4 months ago by ▴ 30
4
votes
12
replies
911
views
Ensembl down???
biomaRt
4 months ago bas_work ▴ 30
3
votes
2
replies
400
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl biomaRt
4 months ago henrydionne ▴ 10
1
vote
2
replies
588
views
How to find stop codons for a list of genes
stopcodon biomaRt
4 months ago Marek Gierlinski ▴ 30
0
votes
10
replies
786
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R BioMart biomaRt
5 months ago • updated 7 weeks ago ScafioRuo • 0
10
votes
10
replies
6.4k
views
biomaRt not working - lazy table error
error lazy R biomaRt table
updated 29 days ago by • 0 • written 5 months ago by ▴ 10
0
votes
3
replies
452
views
determine if R package or it's dependencies functionality require internet access
biomaRt
updated 5 months ago by 50k • written 5 months ago by • 0
1
vote
4
replies
641
views
biomaRt code/getBM function no longer importing 'coding' sequence via seqType argument, "Invalid attribute(s): coding" error
biomaRt
6 months ago andrew.b.kleist ▴ 10
7
votes
6
replies
4.0k
views
Conversion of UniProt to Ensembl
biomaRt ensembldb UniProt.ws
updated 6 months ago by 690 • written 20 months ago by ▴ 20
0
votes
2
replies
347
views
Biomart - upstream region of 'coding'
biomaRt
updated 7 months ago by ★ 6.5k • written 7 months ago by ▴ 20
0
votes
0
replies
351
views
Getting CDS 5'/CDS3' incomplete flags info from ENSEMBL using biomaRt
biomaRt
8 months ago ali.oghabian • 0
1
vote
5
replies
582
views
Errors with makeTxDbFromBiomart
biomaRt
updated 8 months ago by 65k • written 8 months ago by ▴ 10
3
votes
2
replies
1.0k
views
ERROR in EnrichKEGG(), 'species should be listed' in, download method do not change
KEGG DESeq2 biomaRt clusterProfiler org.Mm.eg.db
updated 8 months ago by ★ 3.9k • written 8 months ago by ▴ 10
0
votes
3
replies
737
views
Error with makeTxDbFromBiomart
DEXSeq biomaRt
updated 8 months ago by 16k • written 9 months ago by • 0
1
vote
2
replies
582
views
biomaRt not retrieving complete list of functional consequences associated with list of SNPs
ensembl R biomaRt
8 months ago Miguel • 0
0
votes
1
reply
600
views
Trouble using biomaRt to pull pathway genes from GO
GO biomaRt
updated 9 months ago by 65k • written 9 months ago by • 0
0
votes
1
reply
1.4k
views
News: News:Ensembl 110 has been released
ensembldb biomaRt
updated 9 months ago by 41k • written 9 months ago by ▴ 30
0
votes
1
reply
792
views
multiple filters in biomaRt
biomaRt
updated 10 months ago by ▴ 10 • written 11 months ago by • 0
2
votes
4
replies
904
views
Use with_go along with other filters in getBM function
Annotation biomaRt
11 months ago • updated 10 months ago RuBBiT0 ▴ 10
1
vote
2
replies
766
views
Error: biomaRt has encountered an unexpected server error.
biomaRt
updated 10 months ago by ★ 6.5k • written 11 months ago by • 0
0
votes
3
replies
538
views
BioMart Error message when pulling sequences
biomaRt bioma
updated 12 months ago by ★ 6.5k • written 12 months ago by • 0
0
votes
3
replies
1.3k
views
getLDS causes "biomaRt has encountered an unexpected server error"
biomaRt
written 12 months ago by ▴ 30
0
votes
1
reply
1.3k
views
biomaRt - NameSpace loading failed
biomaRt bioma
updated 12 months ago by ★ 6.5k • written 12 months ago by • 0
0
votes
3
replies
650
views
BiomaRt: problems annotating a list of DEGs from DESeq2
biomaRt
updated 12 months ago by 41k • written 12 months ago by • 0
0
votes
2
replies
1.0k
views
Access Ensembl GRCH38 Version 87 Using BiomaRt
biomaRt ensembldb RNA ensembl
updated 12 months ago by ★ 2.0k • written 12 months ago by • 0
0
votes
3
replies
690
views
How to getting synonymous SNPs from BiomaRt before timing out?
biomaRt SNP
updated 12 months ago by 65k • written 13 months ago by • 0
0
votes
2
replies
741
views
Retrieving true orthologs between species BiomaRt
Orthologs BiomaRt
updated 13 months ago by 65k • written 13 months ago by • 0
0
votes
5
replies
2.3k
views
Is biomaRt down?
biomart
updated 13 months ago by • 0 • written 5.3 years ago by • 0
0
votes
4
replies
928
views
Write an annotated DESEQ2 counts CSV, pls help.
DESeq2 biomaRt R
14 months ago Dr. • 0
0
votes
0
replies
675
views
BiomaRt - Problem to access homolog lists
biomaRt ensembldb
14 months ago ginie.dub • 0
3
votes
3
replies
1.6k
views
transcript name mapping between human and mouse
biomaRt getLDS
updated 14 months ago by 65k • written 14 months ago by ▴ 20
5
votes
3
replies
1.4k
views
Problem obtaining NCBI gene IDs from Ensembl version 107
biomaRt ensembldb ensembl
18 months ago • updated 15 months ago jamie.gearing ▴ 60
1
vote
4
replies
696
views
mmc57bl6nj_gene_ensembl biomaRt
biomaRt
15 months ago Maryam • 0
1
vote
3
replies
803
views
Convert Chromosome postion to gene symbol
biomaRt ensembldb
16 months ago mbansal • 0
50 results • Page 1 of 1
Recent ...
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Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph by deeenes ▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0
Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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